Anthropogenic N Deposition Alters the Composition of Expressed Class II Fungal Peroxidases

Anthropogenic N deposition increases soil C storage by reducing the relative abundance of lignolytic fungi

(2018) Elizabeth M. Entwistle et al.   ECOLOGICAL MONOGRAPHS

Accuracy of microbial community diversity estimated by closed- and open-reference OTUs

(2017) Robert C. Edgar   PeerJ

Anthropogenic N deposition increases soil organic matter accumulation without altering its biochemical composition

(2016) Donald R. Zak et al.   GLOBAL CHANGE BIOLOGY

Characterization of a manganese peroxidase from white-rot fungus Trametes sp.48424 with strong ability of degrading different types of dyes and polycyclic aromatic hydrocarbons

(2016) Hao Zhang et al.   JOURNAL OF HAZARDOUS MATERIALS

Diel regulation of hydrogen peroxide defenses by open ocean microbial communities

(2016) J. Jeffrey Morris et al.   JOURNAL OF PLANKTON RESEARCH

Anthropogenic N Deposition Slows Decay by Favoring Bacterial Metabolism: Insights from Metagenomic Analyses

(2016) Zachary B. Freedman et al.   Frontiers in Microbiology

Soil microbial communities are shaped by plant-driven changes in resource availability during secondary succession

(2015) Lauren C. Cline et al.   ECOLOGY

Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii

(2015) Dimitrios Floudas et al.   FUNGAL GENETICS AND BIOLOGY

Comparative Genomics of Early-Diverging Mushroom-Forming Fungi Provides Insights into the Origins of Lignocellulose Decay Capabilities

(2015) László G. Nagy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists

(2015) Annegret Kohler et al.   NATURE GENETICS

Differential responses of total and active soil microbial communities to long-term experimental N deposition

(2015) Zachary B. Freedman et al.   SOIL BIOLOGY & BIOCHEMISTRY

Forest floor community metatranscriptomes identify fungal and bacterial responses to N deposition in two maple forests

(2015) Cedar N. Hesse et al.   Frontiers in Microbiology

Atmospheric N Deposition Increases Bacterial Laccase-Like Multicopper Oxidases: Implications for Organic Matter Decay

(2014) Zachary Freedman et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Chronic nitrogen additions suppress decomposition and sequester soil carbon in temperate forests

(2014) S. D. Frey et al.   BIOGEOCHEMISTRY

Biochemical and molecular characterization of an atypical manganese peroxidase of the litter-decomposing fungus Agrocybe praecox

(2014) Kristiina Hildén et al.   FUNGAL GENETICS AND BIOLOGY

EctomycorrhizalCortinariusspecies participate in enzymatic oxidation of humus in northern forest ecosystems

(2014) Inga T. M. Bödeker et al.   NEW PHYTOLOGIST

Widespread Occurrence of Expressed Fungal Secretory Peroxidases in Forest Soils

(2014) Harald Kellner et al.   PLoS One

PCR Primers to Study the Diversity of Expressed Fungal Genes Encoding Lignocellulolytic Enzymes in Soils Using High-Throughput Sequencing

(2014) Florian Barbi et al.   PLoS One

Dispersal limitation structures fungal community assembly in a long-term glacial chronosequence

(2013) Lauren C. Cline et al.   ENVIRONMENTAL MICROBIOLOGY

Lignin-degrading peroxidases in Polyporales: an evolutionary survey based on 10 sequenced genomes

(2013) Francisco J. Ruiz-Dueñas et al.   MYCOLOGIA

RefSeq microbial genomes database: new representation and annotation strategy

(2013) Tatiana Tatusova et al.   NUCLEIC ACIDS RESEARCH

MycoCosm portal: gearing up for 1000 fungal genomes

(2013) Igor V. Grigoriev et al.   NUCLEIC ACIDS RESEARCH

Long-Term Experimental Nitrogen Deposition Alters the Composition of the Active Fungal Community in the Forest Floor

(2013) Elizabeth M. Entwistle et al.   SOIL SCIENCE SOCIETY OF AMERICA JOURNAL

FunGene: the functional gene pipeline and repository

(2013) Jordan A. Fish et al.   Frontiers in Microbiology

Microbial Mechanisms Mediating Increased Soil C Storage under Elevated Atmospheric N Deposition

(2012) Sarah D. Eisenlord et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

The phylogenetic Kantorovich-Rubinstein metric for environmental sequence samples

(2012) Steven N. Evans et al.   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY

PeroxiBase: a database for large-scale evolutionary analysis of peroxidases

(2012) Nizar Fawal et al.   NUCLEIC ACIDS RESEARCH

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche

(2012) E. Morin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

(2012) D. Floudas et al.   SCIENCE

Screening of white-rot fungi manganese peroxidases: a comparison between the specific activities of the enzyme from different native producers

(2012) Juho Järvinen et al.   AMB Express

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Chronic N deposition alters root respiration-tissue N relationship in northern hardwood forests

(2011) Andrew J. Burton et al.   GLOBAL CHANGE BIOLOGY

Simulated N deposition negatively impacts sugar maple regeneration in a northern hardwood ecosystem

(2011) Sierra L. Patterson et al.   JOURNAL OF APPLIED ECOLOGY

Pathways for degradation of lignin in bacteria and fungi

(2011) Timothy D. H. Bugg et al.   NATURAL PRODUCT REPORTS

New and classic families of secreted fungal heme peroxidases

(2010) Martin Hofrichter et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree

(2010) Frederick A Matsen et al.   BMC BIOINFORMATICS

The emerging role for bacteria in lignin degradation and bio-product formation

(2010) Timothy DH Bugg et al.   CURRENT OPINION IN BIOTECHNOLOGY

Lignin-modifying enzymes in filamentous basidiomycetes - ecological, functional and phylogenetic review

(2010) Taina K. Lundell et al.   JOURNAL OF BASIC MICROBIOLOGY

Reduction of forest soil respiration in response to nitrogen deposition

(2010) I. A. Janssens et al.   Nature Geoscience

Transformation of 14C-labelled lignin and humic substances in forest soil by the saprobic basidiomycetes Gymnopus erythropus and Hypholoma fasciculare

(2010) Jaroslav Šnajdr et al.   SOIL BIOLOGY & BIOCHEMISTRY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

SIMULATED ATMOSPHERIC NO3−DEPOSITION INCREASES SOIL ORGANIC MATTER BY SLOWING DECOMPOSITION

(2009) Donald R. Zak et al.   ECOLOGICAL APPLICATIONS

ClassII peroxidase-encoding genes are present in a phylogenetically wide range of ectomycorrhizal fungi

(2009) Inga T M Bödeker et al.   ISME Journal

Phenol oxidase, peroxidase and organic matter dynamics of soil

(2009) Robert L. Sinsabaugh   SOIL BIOLOGY & BIOCHEMISTRY

Substrate oxidation sites in versatile peroxidase and other basidiomycete peroxidases

(2008) F. J. Ruiz-Duenas et al.   JOURNAL OF EXPERIMENTAL BOTANY

Molecular Evolution and Diversity of Lignin Degrading Heme Peroxidases in the Agaricomycetes

(2008) Ingo Morgenstern et al.   JOURNAL OF MOLECULAR EVOLUTION

Transformation of the Nitrogen Cycle: Recent Trends, Questions, and Potential Solutions

(2008) J. N. Galloway et al.   SCIENCE