Genus-Wide Assessment of Lignocellulose Utilization in the Extremely Thermophilic Genus Caldicellulosiruptor by Genomic, Pangenomic, and Metagenomic Analyses
Published 2018 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Genus-Wide Assessment of Lignocellulose Utilization in the Extremely Thermophilic Genus
Caldicellulosiruptor
by Genomic, Pangenomic, and Metagenomic Analyses
Authors
Keywords
-
Journal
APPLIED AND ENVIRONMENTAL MICROBIOLOGY
Volume 84, Issue 9, Pages -
Publisher
American Society for Microbiology
Online
2018-03-29
DOI
10.1128/aem.02694-17
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- A Highly Thermostable Kanamycin Resistance Marker Expands the Tool Kit for Genetic Manipulation of Caldicellulosiruptor bescii
- (2016) Gina L. Lipscomb et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Multidomain, Surface Layer-associated Glycoside Hydrolases Contribute to Plant Polysaccharide Degradation byCaldicellulosiruptorSpecies
- (2016) Jonathan M. Conway et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
- (2016) Sudhir Kumar et al. MOLECULAR BIOLOGY AND EVOLUTION
- IMG/M: integrated genome and metagenome comparative data analysis system
- (2016) I-Min A. Chen et al. NUCLEIC ACIDS RESEARCH
- A new view of the tree of life
- (2016) Laura A. Hug et al. Nature Microbiology
- Comparative Analysis of Extremely Thermophilic Caldicellulosiruptor Species Reveals Common and Unique Cellular Strategies for Plant Biomass Utilization
- (2015) Jeffrey V. Zurawski et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Distinct Roles for Carbohydrate-Binding Modules of Glycoside Hydrolase 10 (GH10) and GH11 Xylanases from Caldicellulosiruptor sp. Strain F32 in Thermostability and Catalytic Efficiency
- (2015) Dong-Dong Meng et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison
- (2015) Michael Richter et al. BIOINFORMATICS
- Discrete and Structurally Unique Proteins (Tāpirins) Mediate Attachment of Extremely ThermophilicCaldicellulosiruptorSpecies to Cellulose
- (2015) Sara E. Blumer-Schuette et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- The Pfam protein families database: towards a more sustainable future
- (2015) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- Expression of Heterologous Cellulases inThermotogasp. Strain RQ2
- (2015) Hui Xu et al. Biomed Research International
- Deletion of Caldicellulosiruptor besciiCelA reveals its crucial role in the deconstruction of lignocellulosic biomass
- (2014) Jenna Young et al. Biotechnology for Biofuels
- Thermotoga profunda sp. nov. and Thermotoga caldifontis sp. nov., anaerobic thermophilic bacteria isolated from terrestrial hot springs
- (2014) K. Mori et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Caldicellulosiruptor changbaiensis sp. nov., a cellulolytic and hydrogen-producing bacterium from a hot spring
- (2014) W. Bing et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Community Analysis of Plant Biomass-Degrading Microorganisms from Obsidian Pool, Yellowstone National Park
- (2014) Tatiana A. Vishnivetskaya et al. MICROBIAL ECOLOGY
- Direct conversion of plant biomass to ethanol by engineered Caldicellulosiruptor bescii
- (2014) D. Chung et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Crystallization and preliminary X-ray diffraction analysis of the secreted protein Athe_0614 fromCaldicellulosiruptor bescii
- (2013) Hiroshi Yokoyama et al. Acta Crystallographica Section F-Structural Biology and Crystallization Communications
- Molecular signatures for the phylum (class) Thermotogae and a proposal for its division into three orders (Thermotogales, Kosmotogales ord. nov. and Petrotogales ord. nov.) containing four families (Thermotogaceae, Fervidobacteriaceae fam. nov., Kosmotogaceae fam. nov. and Petrotogaceae fam. nov.) and a new genus Pseudothermotoga gen. nov. with five new combinations
- (2013) Vaibhav Bhandari et al. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY
- Metabolic engineering of Caldicellulosiruptor bescii yields increased hydrogen production from lignocellulosic biomass
- (2013) Minseok Cha et al. Biotechnology for Biofuels
- Global transcriptome analysis of Clostridium thermocellum ATCC 27405 during growth on dilute acid pretreated Populus and switchgrass
- (2013) Charlotte M Wilson et al. Biotechnology for Biofuels
- Overcoming restriction as a barrier to DNA transformation in Caldicellulosiruptor species results in efficient marker replacement
- (2013) Daehwan Chung et al. Biotechnology for Biofuels
- An extremely thermophilic anaerobic bacterium Caldicellulosiruptor sp. F32 exhibits distinctive properties in growth and xylanases during xylan hydrolysis
- (2013) Yu Ying et al. ENZYME AND MICROBIAL TECHNOLOGY
- Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
- (2013) Chen-Shan Chin et al. NATURE METHODS
- The carbohydrate-active enzymes database (CAZy) in 2013
- (2013) Vincent Lombard et al. NUCLEIC ACIDS RESEARCH
- Construction of a Stable Replicating Shuttle Vector for Caldicellulosiruptor Species: Use for Extending Genetic Methodologies to Other Members of This Genus
- (2013) Daehwan Chung et al. PLoS One
- Revealing Nature's Cellulase Diversity: The Digestion Mechanism of Caldicellulosiruptor bescii CelA
- (2013) R. Brunecky et al. SCIENCE
- Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory
- (2012) Mark J Chaisson et al. BMC BIOINFORMATICS
- Caldicellulosiruptor Core and Pangenomes Reveal Determinants for Noncellulosomal Thermophilic Deconstruction of Plant Biomass
- (2012) S. E. Blumer-Schuette et al. JOURNAL OF BACTERIOLOGY
- dbCAN: a web resource for automated carbohydrate-active enzyme annotation
- (2012) Yanbin Yin et al. NUCLEIC ACIDS RESEARCH
- Methylation by a Unique α-class N4-Cytosine Methyltransferase Is Required for DNA Transformation of Caldicellulosiruptor bescii DSM6725
- (2012) Daehwan Chung et al. PLoS One
- S-Layer Homology Domain Proteins Csac_0678 and Csac_2722 Are Implicated in Plant Polysaccharide Deconstruction by the Extremely Thermophilic Bacterium Caldicellulosiruptor saccharolyticus
- (2011) Inci Ozdemir et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Glycoside hydrolase inventory drives plant polysaccharide deconstruction by the extremely thermophilic bacterium Caldicellulosiruptor saccharolyticus
- (2011) Amy L. VanFossen et al. BIOTECHNOLOGY AND BIOENGINEERING
- Draft Genome Sequence of Caloramator australicus Strain RC3T, a Thermoanaerobe from the Great Artesian Basin of Australia
- (2011) C. D. Ogg et al. JOURNAL OF BACTERIOLOGY
- Complete Genome Sequences for the Anaerobic, Extremely Thermophilic Plant Biomass-Degrading Bacteria Caldicellulosiruptor hydrothermalis, Caldicellulosiruptor kristjanssonii, Caldicellulosiruptor kronotskyensis, Caldicellulosiruptor owensensis, and Caldicellulosiruptor lactoaceticus
- (2011) S. E. Blumer-Schuette et al. JOURNAL OF BACTERIOLOGY
- Identification and characterization of a multidomain hyperthermophilic cellulase from an archaeal enrichment
- (2011) Joel E. Graham et al. Nature Communications
- Phylogenetic, Microbiological, and Glycoside Hydrolase Diversities within the Extremely Thermophilic, Plant Biomass-Degrading Genus Caldicellulosiruptor
- (2010) S. E. Blumer-Schuette et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- SequenceMatrix: concatenation software for the fast assembly of multi-gene datasets with character set and codon information
- (2010) Gaurav Vaidya et al. CLADISTICS
- Complete Genome Sequence of the Cellulolytic Thermophile Caldicellulosiruptor obsidiansis OB47T
- (2010) J. G. Elkins et al. JOURNAL OF BACTERIOLOGY
- Caloramator australicus sp. nov., a thermophilic, anaerobic bacterium from the Great Artesian Basin of Australia
- (2009) C. D. Ogg et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Classification of 'Anaerocellum thermophilum' strain DSM 6725 as Caldicellulosiruptor bescii sp. nov.
- (2009) S.-J. Yang et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Hydrogenomics of the Extremely Thermophilic Bacterium Caldicellulosiruptor saccharolyticus
- (2008) H. J. G. van de Werken et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Extremely thermophilic microorganisms for biomass conversion: status and prospects
- (2008) Sara E Blumer-Schuette et al. CURRENT OPINION IN BIOTECHNOLOGY
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started