Changes in the Rumen Epithelial Microbiota of Cattle and Host Gene Expression in Response to Alterations in Dietary Carbohydrate Composition

Epimural bacterial community structure in the rumen of Holstein cows with different responses to a long-term subacute ruminal acidosis diet challenge

(2017) S.U. Wetzels et al.   JOURNAL OF DAIRY SCIENCE

Review: Utilization of yeast of Saccharomyces cerevisiae origin in artificially raised calves

(2017) Gibson M. Alugongo et al.   Journal of Animal Science and Biotechnology

Maintaining stability of the rumen ecosystem is associated with changes of microbial composition and epithelial TLR signaling

(2017) Hong Shen et al.   MicrobiologyOpen

Effects of the replacement of concentrate and fibre-rich hay by high-quality hay on chewing, rumination and nutrient digestibility in non-lactating Holstein cows

(2016) Maria-Theresia Kleefisch et al.   ARCHIVES OF ANIMAL NUTRITION

Specific microbiome-dependent mechanisms underlie the energy harvest efficiency of ruminants

(2016) Sheerli Kruger Ben Shabat et al.   ISME Journal

Transient feeding of a concentrate-rich diet increases the severity of subacute ruminal acidosis in dairy cattle1

(2016) P. Pourazad et al.   JOURNAL OF ANIMAL SCIENCE

Concentrate diet modulation of ruminal genes involved in cell proliferation and apoptosis is related to combined effects of short-chain fatty acid and pH in rumen of goats

(2016) Hongbing Gui et al.   JOURNAL OF DAIRY SCIENCE

Induction of Subacute Ruminal Acidosis Affects the Ruminal Microbiome and Epithelium

(2016) Joshua C. McCann et al.   Frontiers in Microbiology

Effects of ruminal doses of sucrose, lactose, and corn starch on ruminal fermentation and expression of genes in ruminal epithelial cells

(2015) M. Oba et al.   JOURNAL OF DAIRY SCIENCE

High-grain feeding causes strong shifts in ruminal epithelial bacterial community and expression of Toll-like receptor genes in goats

(2015) Jun-hua Liu et al.   Frontiers in Microbiology

Redundancy, resilience, and host specificity of the ruminal microbiota: implications for engineering improved ruminal fermentations

(2015) Paul J. Weimer   Frontiers in Microbiology

Reprograming of gut microbiome energy metabolism by the FUT2 Crohn’s disease risk polymorphism

(2014) Maomeng Tong et al.   ISME Journal

Characterization of the Core Rumen Microbiome in Cattle during Transition from Forage to Concentrate as Well as during and after an Acidotic Challenge

(2014) Renee M. Petri et al.   PLoS One

Rumen Cellulosomics: Divergent Fiber-Degrading Strategies Revealed by Comparative Genome-Wide Analysis of Six Ruminococcal Strains

(2014) Bareket Dassa et al.   PLoS One

Grain-rich diets differently alter ruminal and colonic abundance of microbial populations and lipopolysaccharide in goats

(2013) Barbara U. Metzler-Zebeli et al.   ANAEROBE

Changes in the Rumen Epimural Bacterial Diversity of Beef Cattle as Affected by Diet and Induced Ruminal Acidosis

(2013) R. M. Petri et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Epithelial response to high-grain diets involves alteration in nutrient transporters and Na+/K+-ATPase mRNA expression in rumen and colon of goats1

(2013) B. U. Metzler-Zebeli et al.   JOURNAL OF ANIMAL SCIENCE

Microbiota-liberated host sugars facilitate post-antibiotic expansion of enteric pathogens

(2013) Katharine M. Ng et al.   NATURE

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Interplay between rumen digestive disorders and diet-induced inflammation in dairy cattle

(2012) Q. Zebeli et al.   RESEARCH IN VETERINARY SCIENCE

Interactions Between the Microbiota and the Immune System

(2012) L. V. Hooper et al.   SCIENCE

Bovine rumen epithelium undergoes rapid structural adaptations during grain-induced subacute ruminal acidosis

(2011) Michael A. Steele et al.   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

Rumen epithelial adaptation to ruminal acidosis in lactating cattle involves the coordinated expression of insulin-like growth factor-binding proteins and a cholesterolgenic enzyme

(2011) M.A. Steele et al.   JOURNAL OF DAIRY SCIENCE

Sheep rumen and omasum primary cultures and source epithelia: barrier function aligns with expression of tight junction proteins

(2011) F. Stumpff et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Composition, spatial distribution, and diversity of the bacterial communities in the rumen of cows fed different forages

(2010) Yunhong Kong et al.   FEMS MICROBIOLOGY ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Alfalfa pellet-induced subacute ruminal acidosis in dairy cows increases bacterial endotoxin in the rumen without causing inflammation

(2009) E. Khafipour et al.   JOURNAL OF DAIRY SCIENCE