Transcriptome Sequencing (RNA-seq) Analysis of the Effects of Metal Nanoparticle Exposure on the Transcriptome of Chlamydomonas reinhardtii

Toxicological effects of nanometer titanium dioxide (nano-TiO2) on Chlamydomonas reinhardtii

(2012) Lanzhou Chen et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Cloning and expression analysis of two different LhcSR genes involved in stress adaptation in an Antarctic microalga, Chlamydomonas sp. ICE-L

(2012) Shanli Mou et al.   EXTREMOPHILES

Development of proteasome inhibitors as research tools and cancer drugs

(2012) Alfred L. Goldberg   JOURNAL OF CELL BIOLOGY

Industrial production quantities and uses of ten engineered nanomaterials in Europe and the world

(2012) Fabiano Piccinno et al.   JOURNAL OF NANOPARTICLE RESEARCH

Multimethod quantification of Ag+ release from nanosilver

(2012) Madjid Hadioui et al.   TALANTA

A Decade of Toxicogenomic Research and Its Contribution to Toxicological Science

(2012) Minjun Chen et al.   TOXICOLOGICAL SCIENCES

Chemical and Biological Properties of Polysaccharide-Coated Titania Nanoparticles: The Key Role of Proteins

(2011) Daniela Pasqui et al.   BIOMACROMOLECULES

Physicochemical characterization of engineered nanoparticles under physiological conditions: Effect of culture media components and particle surface coating

(2011) Julien Fatisson et al.   COLLOIDS AND SURFACES B-BIOINTERFACES

Characterization of a ribosomal protein L15 cDNA from Chironomus riparius (Diptera; Chironomidae): Transcriptional regulation by cadmium and silver nanoparticles

(2011) Prakash M. Gopalakrishnan Nair et al.   COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY B-BIOCHEMISTRY & MOLECULAR BIOLOGY

Diffusion of Nanoparticles in a Biofilm

(2011) Thomas-Otavio Peulen et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Bioaccumulation and Effects of CdTe/CdS Quantum Dots onChlamydomonas reinhardtii– Nanoparticles or the Free Ions?

(2011) Rute F. Domingos et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Induction of reactive oxygen species inchlamydomonas reinhardtiiin response to contrasting trace metal exposures

(2011) Tasha L. Stoiber et al.   ENVIRONMENTAL TOXICOLOGY

Metal complexes as inhibitors of the 26S proteasome in tumor cells

(2011) Cláudio N. Verani   JOURNAL OF INORGANIC BIOCHEMISTRY

Molecular chaperones in protein folding and proteostasis

(2011) F. Ulrich Hartl et al.   NATURE

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Cytotoxicity and oxidative stress induced by different metallic nanoparticles on human kidney cells

(2011) Igor Pujalté et al.   Particle and Fibre Toxicology

Proteomic Analysis of High-CO2-Inducible Extracellular Proteins in the Unicellular Green Alga, Chlamydomonas reinhardtii

(2011) Masato Baba et al.   PLANT AND CELL PHYSIOLOGY

Systems Biology Approach inChlamydomonasReveals Connections between Copper Nutrition and Multiple Metabolic Steps

(2011) Madeli Castruita et al.   PLANT CELL

Intracompartmental and Intercompartmental Transcriptional Networks Coordinate the Expression of Genes for Organellar Functions

(2011) Dario Leister et al.   PLANT PHYSIOLOGY

Cdc48: a power machine in protein degradation

(2011) Alexandra Stolz et al.   TRENDS IN BIOCHEMICAL SCIENCES

Determination of nanoparticle size distribution together with density or molecular weight by 2D analytical ultracentrifugation

(2011) Randy P. Carney et al.   Nature Communications

Profiling of the reactive oxygen species-related ecotoxicity of CuO, ZnO, TiO2, silver and fullerene nanoparticles using a set of recombinant luminescent Escherichia coli strains: differentiating the impact of particles and solubilised metals

(2010) A. Ivask et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

Transcriptomic signatures in Chlamydomonas reinhardtii as Cd biomarkers in metal mixtures

(2010) C.M. Hutchins et al.   AQUATIC TOXICOLOGY

Role of ubiquitin–proteasome-mediated proteolysis in nervous system disease

(2010) Ashok N. Hegde et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

A comparison of massively parallel nucleotide sequencing with oligonucleotide microarrays for global transcription profiling

(2010) James R Bradford et al.   BMC GENOMICS

Aggregation of titanium dioxide nanoparticles: role of calcium and phosphate

(2010) Rute F. Domingos et al.   Environmental Chemistry

RNA-Seq Analysis of Sulfur-DeprivedChlamydomonasCells Reveals Aspects of Acclimation Critical for Cell Survival

(2010) David González-Ballester et al.   PLANT CELL

Changes in Transcript Abundance in Chlamydomonas reinhardtii following Nitrogen Deprivation Predict Diversion of Metabolism

(2010) R. Miller et al.   PLANT PHYSIOLOGY

A System-Based Comparison of Gene Expression Reveals Alterations in Oxidative Stress, Disruption of Ubiquitin-Proteasome System and Altered Cell Cycle Regulation after Exposure to Cadmium and Methylmercury in Mouse Embryonic Fibroblast

(2010) Xiaozhong Yu et al.   TOXICOLOGICAL SCIENCES

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Omics in algae: Paving the way for a systems biological understanding of algal stress phenomena?

(2009) An Jamers et al.   AQUATIC TOXICOLOGY

Aggregation of Titanium Dioxide Nanoparticles: Role of a Fulvic Acid

(2009) Rute F. Domingos et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Characterizing Manufactured Nanoparticles in the Environment: Multimethod Determination of Particle Sizes

(2009) Rute F. Domingos et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Correlation of mRNA and protein in complex biological samples

(2009) Tobias Maier et al.   FEBS LETTERS

Proteasomal Degradation of Rpn4 in Saccharomyces cerevisiae Is Critical for Cell Viability Under Stressed Conditions

(2009) X. Wang et al.   GENETICS

Signaling between Chloroplasts and the Nucleus: Can a Systems Biology Approach Bring Clarity to a Complex and Highly Regulated Pathway?

(2009) H.-S. Jung et al.   PLANT PHYSIOLOGY

Plastid signalling to the nucleus: messengers still lost in the mists?

(2009) Tatjana Kleine et al.   TRENDS IN GENETICS

Toxicity assessment of manufactured nanomaterials using the unicellular green alga Chlamydomonas reinhardtii

(2008) Jiangxin Wang et al.   CHEMOSPHERE

Manganese Neurotoxicity: Lessons Learned from Longitudinal Studies in Nonhuman Primates

(2008) Neal C. Burton et al.   ENVIRONMENTAL HEALTH PERSPECTIVES

Toxicity of Silver Nanoparticles toChlamydomonas reinhardtii

(2008) Enrique Navarro et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

AQUEOUS TOXICITY AND FOOD CHAIN TRANSFER OF QUANTUM DOTS™ IN FRESHWATER ALGAE AND CERIODAPHNIA DUBIA

(2008) Jennifer L. Bouldin et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

GLOBAL EXPRESSION PROFILING OF CHLAMYDOMONAS REINHARDTII EXPOSED TO TRACE LEVELS OF FREE CADMIUM

(2008) Dana F. Simon et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

Mapping short DNA sequencing reads and calling variants using mapping quality scores

(2008) H. Li et al.   GENOME RESEARCH

Rpn4p is a positive and negative transcriptional regulator of the ubiquitin-proteasome system

(2008) D. S. Karpov et al.   MOLECULAR BIOLOGY

Mapping of the Rpn4p regions responsible for transcriptional activation of proteasome genes

(2008) D. S. Karpov et al.   MOLECULAR BIOLOGY

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

The relationship between metal toxicity and cellular redox imbalance

(2008) Shanti S. Sharma et al.   TRENDS IN PLANT SCIENCE