Intergenic Sequence Comparison of Escherichia coli Isolates Reveals Lifestyle Adaptations but Not Host Specificity

The constancy of global regulation across a species: the concentrations of ppGpp and RpoS are strain-specific in Escherichia coli

(2011) Thomas Ferenci et al.   BMC MICROBIOLOGY

Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species

(2011) C. Luo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Food-borne diseases — The challenges of 20years ago still persist while new ones continue to emerge

(2010) Diane G. Newell et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Altered Regulation of the OmpF Porin by Fis in Escherichia coli during an Evolution Experiment and between B and K-12 Strains

(2010) E. Crozat et al.   JOURNAL OF BACTERIOLOGY

Pathogenomic comparison of human extraintestinal and avian pathogenic Escherichia coli – Search for factors involved in host specificity or zoonotic potential

(2010) Philippe Bauchart et al.   MICROBIAL PATHOGENESIS

A Global Metabolic Shift Is Linked to Salmonella Multicellular Development

(2010) Aaron P. White et al.   PLoS One

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Characterization of cellulose production inEscherichia coliNissle 1917 and its biological consequences

(2009) Cláudia Monteiro et al.   ENVIRONMENTAL MICROBIOLOGY

Synergistic role of curli and cellulose in cell adherence and biofilm formation of attaching and effacingEscherichia coliand identification of Fis as a negative regulator of curli

(2009) Zeus Saldaña et al.   ENVIRONMENTAL MICROBIOLOGY

Genome evolution and adaptation in a long-term experiment with Escherichia coli

(2009) Jeffrey E. Barrick et al.   NATURE

Promoter and regulon analysis of nitrogen assimilation factor, σ54, reveal alternative strategy for E. coli MG1655 flagellar biosynthesis

(2009) Kai Zhao et al.   NUCLEIC ACIDS RESEARCH

Pathogenic adaptation of intracellular bacteria by rewiring a cis-regulatory input function

(2009) S. E. Osborne et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Overexpression of the chromosomally encoded aminoglycoside acetyltransferase eis confers kanamycin resistance in Mycobacterium tuberculosis

(2009) M. A. Zaunbrecher et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative genomics reveal the mechanism of the parallel evolution of O157 and non-O157 enterohemorrhagic Escherichia coli

(2009) Y. Ogura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths

(2009) Marie Touchon et al.   PLoS Genetics

Evidence for a human-specific Escherichia coli clone

(2008) Olivier Clermont et al.   ENVIRONMENTAL MICROBIOLOGY

Assigning Escherichia coli strains to phylogenetic groups: multi-locus sequence typing versus the PCR triplex method

(2008) David M. Gordon et al.   ENVIRONMENTAL MICROBIOLOGY

Evolutionary loss of the rdar morphotype in Salmonella as a result of high mutation rates during laboratory passage

(2008) Carla J Davidson et al.   ISME Journal

The Pangenome Structure of Escherichia coli: Comparative Genomic Analysis of E. coli Commensal and Pathogenic Isolates

(2008) D. A. Rasko et al.   JOURNAL OF BACTERIOLOGY

jModelTest: Phylogenetic Model Averaging

(2008) D. Posada   MOLECULAR BIOLOGY AND EVOLUTION