Cooperativity in Cellular Biochemical Processes: Noise-Enhanced Sensitivity, Fluctuating Enzyme, Bistability with Nonlinear Feedback, and Other Mechanisms for Sigmoidal Responses
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Title
Cooperativity in Cellular Biochemical Processes: Noise-Enhanced Sensitivity, Fluctuating Enzyme, Bistability with Nonlinear Feedback, and Other Mechanisms for Sigmoidal Responses
Authors
Keywords
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Journal
Annual Review of Biophysics
Volume 41, Issue 1, Pages 179-204
Publisher
Annual Reviews
Online
2012-05-12
DOI
10.1146/annurev-biophys-050511-102240
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- (2010) Hong Qian JOURNAL OF PHYSICAL CHEMISTRY B
- Cellular Biology in Terms of Stochastic Nonlinear Biochemical Dynamics: Emergent Properties, Isogenetic Variations and Chemical System Inheritability
- (2010) Hong Qian JOURNAL OF STATISTICAL PHYSICS
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- (2010) H. Ge et al. Journal of the Royal Society Interface
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- (2010) J. Wang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2010) Y. Cao et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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- (2007) Ping Ao et al. MEDICAL HYPOTHESES
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