Mass Spectrometric Analysis of Histone Proteoforms

Proteoform: a single term describing protein complexity

(2013) Lloyd M Smith et al.   NATURE METHODS

Proteomic characterization of novel histone post-translational modifications

(2013) Anna M Arnaudo et al.   Epigenetics & Chromatin

Targeted Data Extraction of the MS/MS Spectra Generated by Data-independent Acquisition: A New Concept for Consistent and Accurate Proteome Analysis

(2012) Ludovic C. Gillet et al.   MOLECULAR & CELLULAR PROTEOMICS

Determination of monoisotopic masses of chimera spectra from high-resolution mass spectrometric data by use of isotopic peak intensity ratio modeling

(2012) Ming Niu et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Identification of 67 Histone Marks and Histone Lysine Crotonylation as a New Type of Histone Modification

(2011) Minjia Tan et al.   CELL

Revealing histone variant induced changes via quantitative proteomics

(2011) Anna M. Arnaudo et al.   CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY

Breaking the histone code with quantitative mass spectrometry

(2011) Laura-Mae P Britton et al.   Expert Review of Proteomics

DeltAMT: A Statistical Algorithm for Fast Detection of Protein Modifications From LC-MS/MS Data

(2011) Yan Fu et al.   MOLECULAR & CELLULAR PROTEOMICS

pParse: A method for accurate determination of monoisotopic peaks in high-resolution mass spectra

(2011) Zuo-F ei Yuan et al.   PROTEOMICS

Open MS/MS spectral library search to identify unanticipated post-translational modifications and increase spectral identification rate

(2010) Ding Ye et al.   BIOINFORMATICS

PepC: proteomics software for identifying differentially expressed proteins based on spectral counting

(2010) N. L. Heinecke et al.   BIOINFORMATICS

Role of spectral counting in quantitative proteomics

(2010) Deborah H Lundgren et al.   Expert Review of Proteomics

Quantifying the Impact of Chimera MS/MS Spectra on Peptide Identification in Large-Scale Proteomics Studies

(2010) Stephane Houel et al.   JOURNAL OF PROTEOME RESEARCH

Peptidylarginine deiminase 4 and citrullination in health and disease

(2009) Consuelo Anzilotti et al.   AUTOIMMUNITY REVIEWS

Identifying differences in protein expression levels by spectral counting and feature selection

(2009) P.C. Carvalho et al.   GENETICS AND MOLECULAR RESEARCH

A Mixed Integer Linear Optimization Framework for the Identification and Quantification of Targeted Post-translational Modifications of Highly Modified Proteins Using Multiplexed Electron Transfer Dissociation Tandem Mass Spectrometry

(2009) Peter A. DiMaggio et al.   MOLECULAR & CELLULAR PROTEOMICS

The detection, correlation, and comparison of peptide precursor and product ions from data independent LC-MS with data dependant LC-MS/MS

(2009) Scott J. Geromanos et al.   PROTEOMICS

Isotopic Peak Intensity Ratio Based Algorithm for Determination of Isotopic Clusters and Monoisotopic Masses of Polypeptides from High-Resolution Mass Spectrometric Data

(2008) Kunsoo Park et al.   ANALYTICAL CHEMISTRY

The Double Bromodomain Proteins Brd2 and Brd3 Couple Histone Acetylation to Transcription

(2008) Gary LeRoy et al.   MOLECULAR CELL

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY