De Novo Assembly and Characterization of Narrow-Ridged Finless Porpoise Renal Transcriptome and Identification of Candidate Genes Involved in Osmoregulation

Adaptive evolution of the osmoregulation-related genes in cetaceans during secondary aquatic adaptation

(2013) Shixia Xu et al.   BMC EVOLUTIONARY BIOLOGY

Minke whale genome and aquatic adaptation in cetaceans

(2013) Hyung-Soon Yim et al.   NATURE GENETICS

De novo Assembly of the Indo-Pacific Humpback Dolphin Leucocyte Transcriptome to Identify Putative Genes Involved in the Aquatic Adaptation and Immune Response

(2013) Duan Gui et al.   PLoS One

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Transcriptome analysis and comparison reveal divergence between two invasive whitefly cryptic species

(2011) Xiao-Wei Wang et al.   BMC GENOMICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

The role of gene expression in ecological speciation

(2010) Scott A. Pavey et al.   Annals of the New York Academy of Sciences

Distinguishing between two species of finless porpoises (Neophocaena phocaenoides and N. asiaeorientalis) in areas of sympatry

(2010) John Y. Wang et al.   MAMMALIA

Interpopulation patterns of divergence and selection across the transcriptome of the copepod Tigriopus californicus

(2010) FELIPE S. BARRETO et al.   MOLECULAR ECOLOGY

Rapid evolution and selection inferred from the transcriptomes of sympatric crater lake cichlid fishes

(2010) K. R. ELMER et al.   MOLECULAR ECOLOGY

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Phylogenetic and Functional Assessment of Orthologs Inference Projects and Methods

(2009) Adrian M. Altenhoff et al.   PLoS Computational Biology

Survivin Expression Quantified by Image Pro-plus Compared With Visual Assessment

(2009) Chao-Jie Wang et al.   APPLIED IMMUNOHISTOCHEMISTRY & MOLECULAR MORPHOLOGY

Mitochondrial phylogeography and population history of finless porpoises in Sino-Japanese waters

(2008) GUANG YANG et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Detecting recent speciation events: the case of the finless porpoise (genus Neophocaena)

(2008) J Y Wang et al.   HEREDITY

Renin-angiotensin system revisited

(2008) F. Fyhrquist et al.   JOURNAL OF INTERNAL MEDICINE

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Immune transcriptome alterations in the temporal cortex of subjects with autism

(2008) Krassimira Garbett et al.   NEUROBIOLOGY OF DISEASE

High-throughput functional annotation and data mining with the Blast2GO suite

(2008) S. Gotz et al.   NUCLEIC ACIDS RESEARCH

Luminal Na+/H+ exchange in the proximal tubule

(2008) I. Alexandru Bobulescu et al.   PFLUGERS ARCHIV-EUROPEAN JOURNAL OF PHYSIOLOGY