Label-free quantification using MALDI mass spectrometry: considerations and perspectives

DeepQuanTR: MALDI-MS-based label-free quantification of proteins in complex biological samples

(2010) Tim Fugmann et al.   PROTEOMICS

A novel reactive ester derivative of biotin with reduced membrane permeability for in vivo biotinylation experiments

(2010) Verena Strassberger et al.   PROTEOMICS

Normalization of peak intensities in bottom-up MS-based proteomics using singular value decomposition

(2009) Yuliya V. Karpievitch et al.   BIOINFORMATICS

Methods for combining peptide intensities to estimate relative protein abundance

(2009) Brian Carrillo et al.   BIOINFORMATICS

Improved CILAT reagents for quantitative proteomics

(2009) Dexing Zeng et al.   BIOORGANIC & MEDICINAL CHEMISTRY LETTERS

In vivo biotinylation of the vasculature in B-cell lymphoma identifies BST-2 as a target for antibody-based therapy

(2009) C. Schliemann et al.   BLOOD

Comparison of public peak detection algorithms for MALDI mass spectrometry data analysis

(2009) Chao Yang et al.   BMC BIOINFORMATICS

Comparative Analysis of the Membrane Proteome of Closely Related Metastatic and Nonmetastatic Tumor Cells

(2009) Christoph Roesli et al.   CANCER RESEARCH

A Proteomic Approach for the Identification of Vascular Markers of Liver Metastasis

(2009) B. Borgia et al.   CANCER RESEARCH

Modern MALDI time-of-flight mass spectrometry

(2009) Marvin L. Vestal   JOURNAL OF MASS SPECTROMETRY

Separation of peptide isomers and conformers by ultra performance liquid chromatography

(2009) Dominic Winter et al.   JOURNAL OF SEPARATION SCIENCE

Development and Evaluation of Normalization Methods for Label-free Relative Quantification of Endogenous Peptides

(2009) Kim Kultima et al.   MOLECULAR & CELLULAR PROTEOMICS

Comprehensive proteomic analysis of human cervical-vaginal fluid using colposcopy samples

(2009) Geert Zegels et al.   Proteome Science

Second Joint HUPO Publication and Proteomics Standards Initiative Workshop

(2009) Sandra Orchard et al.   PROTEOMICS

Recent developments in public proteomic MS repositories and pipelines

(2009) Jennifer A. Mead et al.   PROTEOMICS

Optimized Time Alignment Algorithm for LC−MS Data: Correlation Optimized Warping Using Component Detection Algorithm-Selected Mass Chromatograms

(2008) Christin Christin et al.   ANALYTICAL CHEMISTRY

Peak Intensity Prediction in MALDI-TOF Mass Spectrometry: A Machine Learning Study to support Quantitative Proteomics

(2008) Wiebke A Timm et al.   BMC BIOINFORMATICS

The APEX Quantitative Proteomics Tool: Generating protein quantitation estimates from LC-MS/MS proteomics results

(2008) John C Braisted et al.   BMC BIOINFORMATICS

A new strategy for faster urinary biomarkers identification by Nano-LC-MALDI-TOF/TOF mass spectrometry

(2008) K Benkali et al.   BMC GENOMICS

SILAC Mouse for Quantitative Proteomics Uncovers Kindlin-3 as an Essential Factor for Red Blood Cell Function

(2008) Marcus Krüger et al.   CELL

Mass Spectrometry–Based Proteomics: A Useful Tool for Biomarker Discovery?

(2008) AO Gramolini et al.   CLINICAL PHARMACOLOGY & THERAPEUTICS

Identification of the surface-accessible, lineage-specific vascular proteome by two-dimensional peptide mapping

(2008) Christoph Roesli et al.   FASEB JOURNAL

Quantitative mass spectrometry-based techniques for clinical use: Biomarker identification and quantification☆

(2008) Kathryn L. Simpson et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

Label-Free Detection of Differential Protein Expression by LC/MALDI Mass Spectrometry

(2008) Hendrik Neubert et al.   JOURNAL OF PROTEOME RESEARCH

An Assessment of Software Solutions for the Analysis of Mass Spectrometry Based Quantitative Proteomics Data

(2008) Lukas N. Mueller et al.   JOURNAL OF PROTEOME RESEARCH

Highly efficient peptide separations in proteomics

(2007) Koen Sandra et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

Experimental and computational approaches to quantitative proteomics: Status quo and outlook

(2007) Alexandre Panchaud et al.   Journal of Proteomics