Cis–trans isomerization of omega dihedrals in proteins

Cis–trans peptide variations in structurally similar proteins

(2012) Agnel Praveen Joseph et al.   AMINO ACIDS

On the Cis to Trans Isomerization of Prolyl–Peptide Bonds under Tension

(2012) Jian Chen et al.   JOURNAL OF PHYSICAL CHEMISTRY B

How Does Pin1 Catalyze the Cis–Trans Prolyl Peptide Bond Isomerization? A QM/MM and Mean Reaction Force Study

(2012) Esteban Vöhringer-Martinez et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Modeling and Molecular Dynamics of HPA-1a and -1b Polymorphisms: Effects on the Structure of the β3 Subunit of the αIIbβ3 Integrin

(2012) Vincent Jallu et al.   PLoS One

Improving protein fold recognition and template-based modeling by employing probabilistic-based matching between predicted one-dimensional structural properties of query and corresponding native properties of templates

(2011) Y. Yang et al.   BIOINFORMATICS

The mean reaction force: A method to study the influence of the environment on reaction mechanisms

(2011) Esteban Vöhringer-Martinez et al.   JOURNAL OF CHEMICAL PHYSICS

Structural basis for regulation of the Crk signaling protein by a proline switch

(2010) Paramita Sarkar et al.   Nature Chemical Biology

Proline cis-trans isomerization in staphylococcal nuclease: Multi-substate free energy perturbation calculations

(2010) Alec Hodel et al.   PROTEIN SCIENCE

Molecular dynamics simulation of β2-microglobulin in denaturing and stabilizing conditions

(2010) Federico Fogolari et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

αIIbβ3 integrin: new allelic variants in Glanzmann thrombasthenia, effects onITGA2BandITGB3mRNA splicing, expression, and structure-function

(2009) Vincent Jallu et al.   HUMAN MUTATION

Trans−cis Switching Mechanisms in Proline Analogues and Their Relevance for the Gating of the 5-HT3Receptor

(2009) Claudio Melis et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Intra- and Intermolecular Interaction Inducing Pyramidalization on Both Sides of a Proline Dipeptide during Isomerization: An Ab Initio QM/MM Molecular Dynamics Simulation Study in Explicit Water

(2009) Yasushige Yonezawa et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

PBOND: Web Server for the Prediction of Proline and Non-Proline cis/trans Isomerization

(2009) Konstantinos P. Exarchos et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Prediction of cis/trans isomerization using feature selection and support vector machines

(2008) Konstantinos P. Exarchos et al.   JOURNAL OF BIOMEDICAL INFORMATICS

Adaptive biasing force method for scalar and vector free energy calculations

(2008) Eric Darve et al.   JOURNAL OF CHEMICAL PHYSICS