Jaccard index based similarity measure to compare transcription factor binding site models

Identification of co-occurring transcription factor binding sites from DNA sequence using clustered position weight matrices

(2011) Young Min Oh et al.   NUCLEIC ACIDS RESEARCH

Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities

(2010) A. Jolma et al.   GENOME RESEARCH

jsPhyloSVG: A Javascript Library for Visualizing Interactive and Vector-Based Phylogenetic Trees on the Web

(2010) Samuel A. Smits et al.   PLoS One

JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles

(2009) Elodie Portales-Casamar et al.   NUCLEIC ACIDS RESEARCH

Natural similarity measures between position frequency matrices with an application to clustering

(2008) Utz J. Pape et al.   BIOINFORMATICS

A Novel Bayesian DNA Motif Comparison Method for Clustering and Retrieval

(2008) Naomi Habib et al.   PLoS Computational Biology