Constructing Minimal Phylogenetic Networks from Softwired Clusters is Fixed Parameter Tractable

On the Elusiveness of Clusters

(2011) Steven Kelk et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Algorithms for Reticulate Networks of Multiple Phylogenetic Trees

(2011) Zhi-Zhong Chen et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Quantifying Hybridization in Realistic Time

(2011) Joshua Collins et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Close lower and upper bounds for the minimum reticulate network of multiple phylogenetic trees

(2010) Yufeng Wu   BIOINFORMATICS

Phylogenetic networks do not need to be complex: using fewer reticulations to represent conflicting clusters

(2010) Leo van Iersel et al.   BIOINFORMATICS

A Survey of Combinatorial Methods for Phylogenetic Networks

(2010) Daniel H. Huson et al.   Genome Biology and Evolution

When two trees go to war

(2010) Leo van Iersel et al.   JOURNAL OF THEORETICAL BIOLOGY

Constructing the Simplest Possible Phylogenetic Network from Triplets

(2009) Leo van Iersel et al.   ALGORITHMICA

Computing galled networks from real data

(2009) D. H. Huson et al.   BIOINFORMATICS

Constructing Level-2 Phylogenetic Networks from Triplets

(2009) L. van Iersel et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

UNIQUENESS, INTRACTABILITY AND EXACT ALGORITHMS: REFLECTIONS ON LEVEL-K PHYLOGENETIC NETWORKS

(2009) LEO VAN IERSEL et al.   Journal of Bioinformatics and Computational Biology

A new recombination lower bound and the minimum perfect phylogenetic forest problem

(2008) Yufeng Wu et al.   JOURNAL OF COMBINATORIAL OPTIMIZATION