ASTRO-FOLD 2.0: An enhanced framework for protein structure prediction

β-hairpin-forming peptides; models of early stages of protein folding

(2010) Agnieszka Lewandowska et al.   BIOPHYSICAL CHEMISTRY

Advances in Rosetta protein structure prediction on massively parallel systems

(2010) S. Raman et al.   IBM JOURNAL OF RESEARCH AND DEVELOPMENT

Relation between Free Energy Landscapes of Proteins and Dynamics

(2010) Gia G. Maisuradze et al.   Journal of Chemical Theory and Computation

Investigation of Protein Folding by Coarse-Grained Molecular Dynamics with the UNRES Force Field

(2010) Gia G. Maisuradze et al.   JOURNAL OF PHYSICAL CHEMISTRY A

I-TASSER: a unified platform for automated protein structure and function prediction

(2010) Ambrish Roy et al.   Nature Protocols

Atomic-Level Characterization of the Structural Dynamics of Proteins

(2010) D. E. Shaw et al.   SCIENCE

A Novel Framework for Predicting In Vivo Toxicities from In Vitro Data Using Optimal Methods for Dense and Sparse Matrix Reordering and Logistic Regression

(2010) Peter A. DiMaggio et al.   TOXICOLOGICAL SCIENCES

Selecting High Quality Protein Structures from Diverse Conformational Ensembles

(2009) Ashwin Subramani et al.   BIOPHYSICAL JOURNAL

An improved hybrid global optimization method for protein tertiary structure prediction

(2009) Scott R. McAllister et al.   COMPUTATIONAL OPTIMIZATION AND APPLICATIONS

Enhanced bounding techniques to reduce the protein conformational search space

(2009) Scott R. McAllister et al.   OPTIMIZATION METHODS & SOFTWARE

Improved prediction of protein side-chain conformations with SCWRL4

(2009) Georgii G. Krivov et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Conformational studies of the α-helical 28-43 fragment of the B3 domain of the immunoglobulin binding protein G fromStreptococcus

(2008) Agnieszka Skwierawska et al.   BIOPOLYMERS

Progress and challenges in protein structure prediction

(2008) Yang Zhang   CURRENT OPINION IN STRUCTURAL BIOLOGY

De novo protein structure generation from incomplete chemical shift assignments

(2008) Yang Shen et al.   JOURNAL OF BIOMOLECULAR NMR

Systematic construction and prediction of the arrangement of the strands of sandwich proteins

(2008) T.S Papatheodorou et al.   Journal of the Royal Society Interface

CS23D: a web server for rapid protein structure generation using NMR chemical shifts and sequence data

(2008) D. S. Wishart et al.   NUCLEIC ACIDS RESEARCH

Consistent blind protein structure generation from NMR chemical shift data

(2008) Y. Shen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Towards accurate residue-residue hydrophobic contact prediction for α helical proteins via integer linear optimization

(2008) R. Rajgaria et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Recursive domains in proteins

(2002) Teresa Przytycka et al.   PROTEIN SCIENCE