A combined prediction strategy increases identification of peptides bound with high affinity and stability to porcine MHC class I molecules SLA-1*04:01, SLA-2*04:01, and SLA-3*04:01

Characterization of binding specificities of bovine leucocyte class I molecules: impacts for rational epitope discovery

(2014) Andreas M. Hansen et al.   IMMUNOGENETICS

Uncovering the Peptide-Binding Specificities of HLA-C: A General Strategy To Determine the Specificity of Any MHC Class I Molecule

(2014) Michael Rasmussen et al.   JOURNAL OF IMMUNOLOGY

Swine Leukocyte Antigen (SLA) class I allele typing of Danish swine herds and identification of commonly occurring haplotypes using sequence specific low and high resolution primers

(2014) Lasse Eggers Pedersen et al.   VETERINARY IMMUNOLOGY AND IMMUNOPATHOLOGY

Unique peptide-binding motif for Mamu-B*037:01: an MHC class I allele common to Indian and Chinese rhesus macaques

(2013) Natasja G. de Groot et al.   IMMUNOGENETICS

NetMHCstab- predicting stability of peptide-MHC-I complexes; impacts for cytotoxic T lymphocyte epitope discovery

(2013) Kasper W. Jørgensen et al.   IMMUNOLOGY

Peptide-MHC class I stability is a better predictor than peptide affinity of CTL immunogenicity

(2012) Mikkel Harndahl et al.   EUROPEAN JOURNAL OF IMMUNOLOGY

Seq2Logo: a method for construction and visualization of amino acid binding motifs and sequence profiles including sequence weighting, pseudo counts and two-sided representation of amino acid enrichment and depletion

(2012) Martin Christen Frølund Thomsen et al.   NUCLEIC ACIDS RESEARCH

Porcine major histocompatibility complex (MHC) class I molecules and analysis of their peptide-binding specificities

(2011) Lasse Eggers Pedersen et al.   IMMUNOGENETICS

Application of high-resolution, massively parallel pyrosequencing for estimation of haplotypes and gene expression levels of swine leukocyte antigen (SLA) class I genes

(2011) Yuki F. Kita et al.   IMMUNOGENETICS

Prediction of epitopes using neural network based methods

(2010) Claus Lundegaard et al.   JOURNAL OF IMMUNOLOGICAL METHODS

Real-time, high-throughput measurements of peptide–MHC-I dissociation using a scintillation proximity assay

(2010) Mikkel Harndahl et al.   JOURNAL OF IMMUNOLOGICAL METHODS

Sequence-based characterization of swine leucocyte antigen alleles in commercially available porcine cell lines

(2009) C. S. Ho et al.   International Journal of Immunogenetics

Pan-specific MHC class I predictors: a benchmark of HLA class I pan-specific prediction methods

(2008) Hao Zhang et al.   BIOINFORMATICS

MHC motif viewer

(2008) Nicolas Rapin et al.   IMMUNOGENETICS

NetMHCpan, a method for MHC class I binding prediction beyond humans

(2008) Ilka Hoof et al.   IMMUNOGENETICS

The peptide-binding specificity of HLA-A*3001 demonstrates membership of the HLA-A3 supertype

(2008) Kasper Lamberth et al.   IMMUNOGENETICS

One-Pot, Mix-and-Read Peptide-MHC Tetramers

(2008) Christian Leisner et al.   PLoS One

Quantitative Predictions of Peptide Binding to Any HLA-DR Molecule of Known Sequence: NetMHCIIpan

(2008) Morten Nielsen et al.   PLoS Computational Biology