Utility of mitochondrial CO1 sequences for species discrimination of Spirotrichea ciliates (Protozoa, Ciliophora)

Systematic studies on ciliates (Alveolata, Ciliophora) in China: Progress and achievements based on molecular information

(2017) Feng Gao et al.   EUROPEAN JOURNAL OF PROTISTOLOGY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Utility of combining morphological characters, nuclear and mitochondrial genes: An attempt to resolve the conflicts of species identification for ciliated protists

(2016) Yan Zhao et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Paramecium putrinum (Ciliophora, Protozoa): The first insight into the variation of two DNA fragments – Molecular support for the existence of cryptic species

(2014) Sebastian Tarcz et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Taxonomy and molecular phylogeny of fourStrombidiumspecies, including description ofS. pseudostylifersp. nov. (Ciliophora, Oligotrichia)

(2014) Wen Song et al.   SYSTEMATICS AND BIODIVERSITY

DAMBE5: A Comprehensive Software Package for Data Analysis in Molecular Biology and Evolution

(2013) Xuhua Xia   MOLECULAR BIOLOGY AND EVOLUTION

The D1-D2 region of the large subunit ribosomal DNA as barcode for ciliates

(2013) T. Stoeck et al.   Molecular Ecology Resources

An assessment of haplotype variation in ribosomal and mitochondrial DNA fragments suggests incomplete lineage sorting in some species of the Paramecium aurelia complex (Ciliophora, Protozoa)

(2013) Sebastian Tarcz et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Genetic Differentiation of the Mitochondrial Cytochrome Oxidase c Subunit I Gene in Genus Paramecium (Protista, Ciliophora)

(2013) Yan Zhao et al.   PLoS One

Species Boundaries in Tintinnid Ciliates: A Case Study - Morphometric Variability, Molecular Characterization, and Temporal Distribution of Helicostomella species (Ciliophora, Tintinnina)

(2012) Dapeng Xu et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Variation in ribosomal and mitochondrial DNA sequences demonstrates the existence of intraspecific groups in Paramecium multimicronucleatum (Ciliophora, Oligohymenophorea)

(2012) Sebastian Tarcz et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Utility of Genetic Markers and Morphology for Species Discrimination within the Order Tintinnida (Ciliophora, Spirotrichea)

(2012) Luciana F. Santoferrara et al.   PROTIST

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Comparative analysis of the mitochondrial cytochromecoxidase subunit I (COI) gene in ciliates (Alveolata, Ciliophora) and evaluation of its suitability as a biodiversity marker

(2011) Michaela C. Strüder-Kypke et al.   SYSTEMATICS AND BIODIVERSITY

Redescription of Favella ehrenbergii (Claparède and Lachmann, 1858) Jörgensen, 1924 (Ciliophora: Choreotrichia), with Phylogenetic Analyses Based on Small Subunit rRNA Gene Sequences

(2010) SUN YOUNG KIM et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Small subunit ribosomal RNA and mitochondrial cytochrome c oxidase subunit 1 gene sequences of 21 strains of the parasitic scuticociliate Miamiensis avidus (Ciliophora, Scuticociliatia)

(2010) Sung-Ju Jung et al.   PARASITOLOGY RESEARCH

Barcoding Tetrahymena: Discriminating Species and Identifying Unknowns Using the Cytochrome c Oxidase Subunit I (cox-1) Barcode

(2010) Chandni P. Kher et al.   PROTIST

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

High-Level Genetic Diversity but No Population Structure Inferred from Nuclear and Mitochondrial Markers of the Peritrichous Ciliate Carchesium polypinum in the Grand River Basin (North America)

(2009) E. Gentekaki et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Molecular phylogeny ofPseudokeronopsis(Protozoa, Ciliophora, Urostylida), with reconsideration of three closely related species at inter- and intra-specific levels inferred from the small subunit ribosomal RNA gene and the ITS1-5.8S-ITS2 region sequences

(2008) Z. Yi et al.   JOURNAL OF ZOOLOGY

Phylogenetic relationships within the genus Tetrahymena inferred from the cytochrome c oxidase subunit 1 and the small subunit ribosomal RNA genes

(2008) C CHANTANGSI et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION