Global gene expression profiling for fruit organs and pathogen infections in the pepper, Capsicum annuum L.

PepperHub, an Informatics Hub for the Chili Pepper Research Community

(2017) Feng Liu et al.   Molecular Plant

Expansion of sesquiterpene biosynthetic gene clusters in pepper confers nonhost resistance to the Irish potato famine pathogen

(2017) Hyun-Ah Lee et al.   NEW PHYTOLOGIST

An RNA-Seq atlas of gene expression in mouse and rat normal tissues

(2017) Julia F. Söllner et al.   Scientific Data

Comparative RNA-seq analysis of transcriptome dynamics during petal development in Rosa chinensis

(2017) Yu Han et al.   Scientific Reports

MultiQC: summarize analysis results for multiple tools and samples in a single report

(2016) Philip Ewels et al.   BIOINFORMATICS

Divergent evolution of multiple virus-resistance genes from a progenitor inCapsicumspp.

(2016) Saet-Byul Kim et al.   NEW PHYTOLOGIST

Virus-induced gene silencing reveals signal transduction components required for the Pvr9 -mediated hypersensitive response in Nicotiana benthamiana

(2016) Phu-Tri Tran et al.   VIROLOGY

Comprehensive RNA-Seq Analysis on the Regulation of Tomato Ripening by Exogenous Auxin

(2016) Jiayin Li et al.   PLoS One

Genome-wide analysis of Dof transcription factors reveals functional characteristics during development and response to biotic stresses in pepper

(2016) Won-Hee Kang et al.   Scientific Reports

Transcriptional Dynamics Driving MAMP-Triggered Immunity and Pathogen Effector-Mediated Immunosuppression in Arabidopsis Leaves Following Infection withPseudomonas syringaepv tomato DC3000

(2015) Laura A. Lewis et al.   PLANT CELL

Global Transcriptome Profiling of Developing Leaf and Shoot Apices Reveals Distinct Genetic and Environmental Control of Floral Transition and Inflorescence Development in Barley

(2015) Benedikt Digel et al.   PLANT CELL

Capsicum annuum transcription factor WRKYa positively regulates defense response upon TMV infection and is a substrate of CaMK1 and CaMK2

(2015) Sung Un Huh et al.   Scientific Reports

Screening Genetic Resources of Capsicum Peppers in Their Primary Center of Diversity in Bolivia and Peru

(2015) Maarten van Zonneveld et al.   PLoS One

Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species

(2014) Seungill Kim et al.   NATURE GENETICS

Multiple recognition of RXLR effectors is associated with nonhost resistance of pepper againstPhytophthora infestans

(2014) Hyun-Ah Lee et al.   NEW PHYTOLOGIST

Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization

(2014) C. Qin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome interplay in the grain transcriptome of hexaploid bread wheat

(2014) M. Pfeifer et al.   SCIENCE

Application of genetics and genomics towards Capsicum translational research

(2013) Nirala Ramchiary et al.   Plant Biotechnology Reports

Genome-Scale Transcriptomic Insights into Early-Stage Fruit Development in Woodland Strawberry Fragaria vesca

(2013) C. Kang et al.   PLANT CELL

The Differential Transcription Network between Embryo and Endosperm in the Early Developing Maize Seed

(2013) X. Lu et al.   PLANT PHYSIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Arabidopsis Defense against Botrytis cinerea: Chronology and Regulation Deciphered by High-Resolution Temporal Transcriptomic Analysis

(2012) O. Windram et al.   PLANT CELL

Pepper EST database: comprehensive in silico tool for analyzing the chili pepper (Capsicum annuum) transcriptome

(2008) Hyun-Jin Kim et al.   BMC PLANT BIOLOGY