Characterization of shifts of koala (Phascolarctos cinereus) intestinal microbial communities associated with antibiotic treatment

Decline causes of Koalas in South East Queensland, Australia: a 17-year retrospective study of mortality and morbidity

(2017) Viviana Gonzalez-Astudillo et al.   Scientific Reports

Chlamydia Serine Protease Inhibitor, targeting HtrA, as a New Treatment for Koala Chlamydia infection

(2016) Amba Lawrence et al.   Scientific Reports

In vitro activity of chloramphenicol, florfenicol and enrofloxacin againstChlamydia pecorumisolated from koalas (Phascolarctos cinereus)

(2015) LA Black et al.   AUSTRALIAN VETERINARY JOURNAL

The unifrac significance test is sensitive to tree topology

(2015) Catherine A. Lozupone et al.   BMC BIOINFORMATICS

The truth about metagenomics: quantifying and counteracting bias in 16S rRNA studies

(2015) J Paul Brooks et al.   BMC MICROBIOLOGY

Inoculation of tannin-degrading bacteria into novel hosts increases performance on tannin-rich diets

(2015) Kevin D. Kohl et al.   ENVIRONMENTAL MICROBIOLOGY

Unusual biology across a group comprising more than 15% of domain Bacteria

(2015) Christopher T. Brown et al.   NATURE

Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform

(2015) Melanie Schirmer et al.   NUCLEIC ACIDS RESEARCH

Variation in koala microbiomes within and between individuals: effect of body region and captivity status

(2015) Niccoló Alfano et al.   Scientific Reports

Cross-biome comparison of microbial association networks

(2015) Karoline Faust et al.   Frontiers in Microbiology

Equivalent input produces different output in the UniFrac significance test

(2014) Jeffrey R Long et al.   BMC BIOINFORMATICS

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

(2014) Susannah J Salter et al.   BMC BIOLOGY

An Expanded Genomic Representation of the Phylum Cyanobacteria

(2014) Rochelle M. Soo et al.   Genome Biology and Evolution

Effects of β-Lactam Antibiotics and Fluoroquinolones on Human Gut Microbiota in Relation to Clostridium difficile Associated Diarrhea

(2014) Henrik Knecht et al.   PLoS One

Chlamydia genomics: providing novel insights into chlamydial biology

(2014) Nathan L. Bachmann et al.   TRENDS IN MICROBIOLOGY

The microbes we eat: abundance and taxonomy of microbes consumed in a day’s worth of meals for three diet types

(2014) Jenna M. Lang et al.   PeerJ

Evaluation of enrofloxacin use in koalas (Phascolarctos cinereus) via population pharmacokinetics and Monte Carlo simulation

(2013) L. A. Black et al.   JOURNAL OF VETERINARY PHARMACOLOGY AND THERAPEUTICS

A RETROSPECTIVE STUDY OF ADMISSION TRENDS OF KOALAS TO A REHABILITATION FACILITY OVER 30 YEARS

(2013) Joanna E. Griffith et al.   JOURNAL OF WILDLIFE DISEASES

Investigation of the koala (Phascolarctos cinereus) hindgut microbiome via 16S pyrosequencing

(2013) Christopher J. Barker et al.   VETERINARY MICROBIOLOGY

Recent advances in understanding the biology, epidemiology and control of chlamydial infections in koalas

(2013) Adam Polkinghorne et al.   VETERINARY MICROBIOLOGY

Genetic diversity of Chlamydia pecorum strains in wild koala locations across Australia and the implications for a recombinant C. pecorum major outer membrane protein based vaccine

(2013) Avinash Kollipara et al.   VETERINARY MICROBIOLOGY

The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria

(2013) Sara C Di Rienzi et al.   eLife

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Microbial Co-occurrence Relationships in the Human Microbiome

(2012) Karoline Faust et al.   PLoS Computational Biology

Using network analysis to explore co-occurrence patterns in soil microbial communities

(2011) Albert Barberán et al.   ISME Journal

Plasma concentrations of chloramphenicol after subcutaneous administration to koalas (Phascolarctos cinereus) with chlamydiosis

(2011) M. GOVENDIR et al.   JOURNAL OF VETERINARY PHARMACOLOGY AND THERAPEUTICS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Effect of storage conditions on the assessment of bacterial community structure in soil and human-associated samples

(2010) Christian L. Lauber et al.   FEMS MICROBIOLOGY LETTERS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Short-Term Antibiotic Treatment Has Differing Long-Term Impacts on the Human Throat and Gut Microbiome

(2010) Hedvig E. Jakobsson et al.   PLoS One

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Prolonged Impact of Antibiotics on Intestinal Microbial Ecology and Susceptibility to Enteric Salmonella Infection

(2009) A. Croswell et al.   INFECTION AND IMMUNITY

The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing

(2008) Les Dethlefsen et al.   PLOS BIOLOGY