Xapuri virus, a novel mammarenavirus: natural reassortment and increased diversity between New World viruses

Detection of Latino virus (Arenaviridae: Mammarenavirus ) naturally infecting Calomys callidus

(2018) Jorlan Fernandes et al.   ACTA TROPICA

Taxonomy of the family Arenaviridae and the order Bunyavirales: update 2018

(2018) Piet Maes et al.   ARCHIVES OF VIROLOGY

Host and viral traits predict zoonotic spillover from mammals

(2017) Kevin J. Olival et al.   NATURE

Chromosomal diversity and molecular divergence among three undescribed species of Neacomys (Rodentia, Sigmodontinae) separated by Amazonian rivers

(2017) Willam Oliveira Da Silva et al.   PLoS One

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Past, present, and future of arenavirus taxonomy

(2015) Sheli R. Radoshitzky et al.   ARCHIVES OF VIROLOGY

Diversity and Karyotypic Evolution in the Genus Neacomys (Rodentia, Sigmodontinae)

(2015) Willam O. da Silva et al.   CYTOGENETIC AND GENOME RESEARCH

Isolation and characterization of a novel arenavirus harbored by Rodents and Shrews in Zhejiang province, China

(2015) Kun Li et al.   VIROLOGY

Superinfection exclusion is absent during acute Junin virus infection of Vero and A549 cells

(2015) Raphaël Gaudin et al.   Scientific Reports

Widespread Recombination, Reassortment, and Transmission of Unbalanced Compound Viral Genotypes in Natural Arenavirus Infections

(2015) Mark D. Stenglein et al.   PLoS Pathogens

The Z Proteins of Pathogenic but Not Nonpathogenic Arenaviruses Inhibit RIG-i-Like Receptor-Dependent Interferon Production

(2015) Junji Xing et al.   JOURNAL OF VIROLOGY

Improvements to pairwise sequence comparison (PASC): a genome-based web tool for virus classification

(2014) Yiming Bao et al.   ARCHIVES OF VIROLOGY

Orione, a web-based framework for NGS analysis in microbiology

(2014) Gianmauro Cuccuru et al.   BIOINFORMATICS

Isolation of Tacaribe Virus, a Caribbean Arenavirus, from Host-Seeking Amblyomma americanum Ticks in Florida

(2014) Katherine A. Sayler et al.   PLoS One

Kraken: ultrafast metagenomic sequence classification using exact alignments

(2014) Derrick E Wood et al.   GENOME BIOLOGY

Identification of Virulence Determinants within the L Genomic Segment of the Pichinde Arenavirus

(2013) L. McLay et al.   JOURNAL OF VIROLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Arenavirus Variations Due to Host-Specific Adaptation

(2013) Juan Zapata et al.   Viruses-Basel

Galaxy tools and workflows for sequence analysis with applications in molecular plant pathology

(2013) Peter J.A. Cock et al.   PeerJ

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Complex patterns of host switching in New World arenaviruses

(2012) NANCY R. IRWIN et al.   MOLECULAR ECOLOGY

RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics

(2012) M. Lohse et al.   NUCLEIC ACIDS RESEARCH

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Efficient Rescue of Recombinant Lassa Virus Reveals the Influence of S Segment Noncoding Regions on Virus Replication and Virulence

(2011) C. G. Albarino et al.   JOURNAL OF VIROLOGY

Why do RNA viruses recombine?

(2011) Etienne Simon-Loriere et al.   NATURE REVIEWS MICROBIOLOGY

Diversity and phylogenetic relationships among the North American Tacaribe serocomplex viruses (Family Arenaviridae)

(2011) Maria N.B. Cajimat et al.   VIROLOGY

Viral replicative capacity is the primary determinant of lymphocytic choriomeningitis virus persistence and immunosuppression

(2010) A. Bergthaler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Reordering contigs of draft genomes using the Mauve Aligner

(2009) Anna I. Rissman et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

Development of Infectious Clones for Virulent and Avirulent Pichinde Viruses: a Model Virus To Study Arenavirus-Induced Hemorrhagic Fevers

(2009) S. Lan et al.   JOURNAL OF VIROLOGY

Z Proteins of New World Arenaviruses Bind RIG-I and Interfere with Type I Interferon Induction

(2009) L. Fan et al.   JOURNAL OF VIROLOGY

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogeny of the genus Arenavirus

(2008) Rémi N Charrel et al.   CURRENT OPINION IN MICROBIOLOGY

Safety, immunogenicity, and efficacy of the ML29 reassortant vaccine for Lassa fever in small non-human primates

(2008) Igor S. Lukashevich et al.   VACCINE