chromploid: An R package for chromosome number evolution across the plant tree of life

Testing the association of phenotypes with polyploidy: An example using herbaceous and woody eudicots

(2017) Rosana Zenil-Ferguson et al.   EVOLUTION

Disparity, diversity, and duplications in the Caryophyllales

(2017) Stephen A. Smith et al.   NEW PHYTOLOGIST

Cladogenetic and Anagenetic Models of Chromosome Number Evolution: A Bayesian Model Averaging Approach

(2017) William A Freyman et al.   SYSTEMATIC BIOLOGY

RevBayes: Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language

(2016) Sebastian Höhna et al.   SYSTEMATIC BIOLOGY

The wondrous cycles of polyploidy in plants

(2015) Jonathan F. Wendel   AMERICAN JOURNAL OF BOTANY

geiger v2.0: an expanded suite of methods for fitting macroevolutionary models to phylogenetic trees

(2014) Matthew W. Pennell et al.   BIOINFORMATICS

Phylogenetic Stochastic Mapping Without Matrix Exponentiation

(2014) Jan Irvahn et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

ChromEvol: Assessing the Pattern of Chromosome Number Evolution and the Inference of Polyploidy along a Phylogeny

(2014) Lior Glick et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Chromosome Counts Database (CCDB) - a community resource of plant chromosome numbers

(2014) Anna Rice et al.   NEW PHYTOLOGIST

Karyotypic Changes through Dysploidy Persist Longer over Evolutionary Time than Polyploid Changes

(2014) Marcial Escudero et al.   PLoS One

A phylogenetic framework for evolutionary study of the nightshades (Solanaceae): a dated 1000-tip tree

(2013) Tiina Särkinen et al.   BMC EVOLUTIONARY BIOLOGY

Exploring power and parameter estimation of the BiSSE method for analyzing species diversification

(2013) Matthew P Davis et al.   BMC EVOLUTIONARY BIOLOGY

Three keys to the radiation of angiosperms into freezing environments

(2013) Amy E. Zanne et al.   NATURE

Assessing Parameter Identifiability in Phylogenetic Models Using Data Cloning

(2012) José Miguel Ponciano et al.   SYSTEMATIC BIOLOGY

Diversitree: comparative phylogenetic analyses of diversification in R

(2012) Richard G. FitzJohn   Methods in Ecology and Evolution

Understanding angiosperm diversification using small and large phylogenetic trees

(2011) S. A. Smith et al.   AMERICAN JOURNAL OF BOTANY

Ancestral polyploidy in seed plants and angiosperms

(2011) Yuannian Jiao et al.   NATURE

phytools: an R package for phylogenetic comparative biology (and other things)

(2011) Liam J. Revell   Methods in Ecology and Evolution

Probabilistic Models of Chromosome Number Evolution and the Inference of Polyploidy

(2009) Itay Mayrose et al.   SYSTEMATIC BIOLOGY

Analysis of comparative data with hierarchical autocorrelation

(2008) Cécile Ané   Annals of Applied Statistics