- Home
- Publications
- Publication Search
- Publication Details
Title
The CRISPR-Cas system in Enterobacteriaceae
Authors
Keywords
-
Journal
Pathogens and Disease
Volume 76, Issue 1, Pages -
Publisher
Oxford University Press (OUP)
Online
2018-01-09
DOI
10.1093/femspd/fty002
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Comparative analysis of CRISPR-Cas systems inKlebsiellagenomes
- (2017) Juntao Shen et al. JOURNAL OF BASIC MICROBIOLOGY
- Molecular characterization of Salmonella Typhimurium isolated in Brazil by CRISPR-MVLST
- (2017) Fernanda Almeida et al. JOURNAL OF MICROBIOLOGICAL METHODS
- CRISPR-Cas system presents multiple transcriptional units including antisense RNAs that are expressed in minimal medium and upregulated by pH in Salmonella enterica serovar Typhi
- (2017) Liliana Medina-Aparicio et al. MICROBIOLOGY-SGM
- Clustered, regularly interspaced short palindromic repeat (CRISPR) diversity and virulence factor distribution in avian Escherichia coli
- (2017) Qiang Fu et al. RESEARCH IN MICROBIOLOGY
- Genetic analysis of Salmonella enterica serovar Gallinarum biovar Pullorum based on characterization and evolution of CRISPR sequence
- (2017) Xiaolei Xie et al. VETERINARY MICROBIOLOGY
- Cas3 is a limiting factor for CRISPR-Cas immunity in Escherichia coli cells lacking H-NS
- (2016) Kristina Majsec et al. BMC MICROBIOLOGY
- CRISPR-Cas gene-editing reveals RsmA and RsmC act through FlhDC to repress the SdhE flavinylation factor and control motility and prodigiosin production in Serratia
- (2016) MICROBIOLOGY-SGM
- Quorum Sensing Controls Adaptive Immunity through the Regulation of Multiple CRISPR-Cas Systems
- (2016) Adrian G. Patterson et al. MOLECULAR CELL
- CRISPR Immunological Memory Requires a Host Factor for Specificity
- (2016) James K. Nuñez et al. MOLECULAR CELL
- Structural basis for promiscuous PAM recognition in type I–E Cascade from E. coli
- (2016) Robert P. Hayes et al. NATURE
- Asymmetric positioning of Cas1–2 complex and Integration Host Factor induced DNA bending guide the unidirectional homing of protospacer in CRISPR-Cas type I-E system
- (2016) K.N.R. Yoganand et al. NUCLEIC ACIDS RESEARCH
- Bioinformatics analyses of Shigella CRISPR structure and spacer classification
- (2016) Pengfei Wang et al. WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY
- Interference-driven spacer acquisition is dominant over naive and primed adaptation in a native CRISPR–Cas system
- (2016) Raymond H. J. Staals et al. Nature Communications
- Evolutionary study of Yersinia genomes deciphers emergence of human pathogenic species
- (2016) Shi Yang Tan et al. Scientific Reports
- CRISPR1 analysis of naturalized surface water and fecalEscherichia colisuggests common origin
- (2016) Lisa D. Tymensen MicrobiologyOpen
- Imipenem represses CRISPR-Cas interference of DNA acquisition through H-NS stimulation in Klebsiella pneumoniae
- (2016) Tzu-Lung Lin et al. Scientific Reports
- Genetic Diversity and Pathogenic Potential of Attaching and Effacing Escherichia coli O26:H11 Strains Recovered from Bovine Feces in the United States
- (2015) Sarah A. Ison et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Structural and Mechanistic Basis of PAM-Dependent Spacer Acquisition in CRISPR-Cas Systems
- (2015) Jiuyu Wang et al. CELL
- Generation of a CRISPR database forYersinia pseudotuberculosiscomplex and role of CRISPR-based immunity in conjugation
- (2015) Katja A. Koskela et al. ENVIRONMENTAL MICROBIOLOGY
- Improved traceability of Shiga-toxin-producing Escherichia coli using CRISPRs for detection and typing
- (2015) Sabine Delannoy et al. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH
- Characterization and evolution of Salmonella CRISPR-Cas systems
- (2015) MICROBIOLOGY-SGM
- Integrase-mediated spacer acquisition during CRISPR–Cas adaptive immunity
- (2015) James K. Nuñez et al. NATURE
- CRISPR adaptation biases explain preference for acquisition of foreign DNA
- (2015) Asaf Levy et al. NATURE
- An updated evolutionary classification of CRISPR–Cas systems
- (2015) Kira S. Makarova et al. NATURE REVIEWS MICROBIOLOGY
- Regulation of the Type I-F CRISPR-Cas system by CRP-cAMP and GalM controls spacer acquisition and interference
- (2015) Adrian G. Patterson et al. NUCLEIC ACIDS RESEARCH
- Different genome stability proteins underpin primed and naïve adaptation inE. coliCRISPR-Cas immunity
- (2015) Ivana Ivančić-Baće et al. NUCLEIC ACIDS RESEARCH
- CRISPR Diversity in E. coli Isolates from Australian Animals, Humans and Environmental Waters
- (2015) Maxim S. Sheludchenko et al. PLoS One
- Polymorphism of CRISPR shows separated natural groupings ofShigellasubtypes and evidence of horizontal transfer of CRISPR
- (2015) Chaojie Yang et al. RNA Biology
- Prevalence and Spatial Distribution ofSalmonellaInfections in the Pennsylvania Raccoon (Procyon lotor)
- (2015) K. J. Very et al. Zoonoses and Public Health
- Diverse Genotypes of Yersinia pestis Caused Plague in Madagascar in 2007
- (2015) Julia M. Riehm et al. PLoS Neglected Tropical Diseases
- The subtype I-F CRISPR–Cas system influences pathogenicity island retention inPectobacterium atrosepticumvia crRNA generation and Csy complex formation
- (2015) Corinna Richter et al. BIOCHEMICAL SOCIETY TRANSACTIONS
- CRISPR Content Correlates with the Pathogenic Potential of Escherichia coli
- (2015) Enriqueta García-Gutiérrez et al. PLoS One
- IncH-Type Plasmid HarboringblaCTX-M-15,blaDHA-1, andqnrB4Genes Recovered from Animal Isolates
- (2014) Andreas Schlüter et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Genetic Diversity and Virulence Potential of Shiga Toxin-Producing Escherichia coli O113:H21 Strains Isolated from Clinical, Environmental, and Food Sources
- (2014) Peter C. H. Feng et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Genomic and metabolic comparison with Dickeya dadantii 3937 reveals the emerging Dickeya solani potato pathogen to display distinctive metabolic activities and T5SS/T6SS-related toxin repertoire
- (2014) Jacques Pédron et al. BMC GENOMICS
- Genome analysis and CRISPR typing of Salmonella enterica serovar Virchow
- (2014) Nathan L Bachmann et al. BMC GENOMICS
- Detection and Analysis of CRISPRs of Shigella
- (2014) Xiangjiao Guo et al. CURRENT MICROBIOLOGY
- CRISPR/Cas9 for genome editing: progress, implications and challenges
- (2014) F. Zhang et al. HUMAN MOLECULAR GENETICS
- New Clustered Regularly Interspaced Short Palindromic Repeat Locus Spacer Pair Typing Method Based on the Newly Incorporated Spacer for Salmonella enterica
- (2014) H. Li et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Characteristics of Emerging Human-Pathogenic Escherichia coli O26:H11 Strains Isolated in France between 2010 and 2013 and Carrying thestx2dGene Only
- (2014) Sabine Delannoy et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Comparative Analysis of Subtyping Methods against a Whole-Genome-Sequencing Standard for Salmonella enterica Serotype Enteritidis
- (2014) Xiangyu Deng et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Short communication: Determination of Salmonella clustered regularly interspaced short palindromic repeats (CRISPR) diversity on dairy farms in Wisconsin and Minnesota
- (2014) C.A. Wehnes et al. JOURNAL OF DAIRY SCIENCE
- CRP represses the CRISPR/Cas system inEscherichia coli: evidence that endogenous CRISPR spacers impede phage P1 replication
- (2014) Chi-Dung Yang et al. MOLECULAR MICROBIOLOGY
- NilD CRISPR RNA contributes toXenorhabdus nematophilacolonization of symbiotic host nematodes
- (2014) Jeff L. Veesenmeyer et al. MOLECULAR MICROBIOLOGY
- Cas1–Cas2 complex formation mediates spacer acquisition during CRISPR–Cas adaptive immunity
- (2014) James K Nuñez et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Detection and characterization of spacer integration intermediates in type I-E CRISPR–Cas system
- (2014) Zihni Arslan et al. NUCLEIC ACIDS RESEARCH
- Priming in the Type I-F CRISPR-Cas system triggers strand-independent spacer acquisition, bi-directionally from the primed protospacer
- (2014) Corinna Richter et al. NUCLEIC ACIDS RESEARCH
- Dynamics of CRISPR Loci in Microevolutionary Process of Yersinia pestis Strains
- (2014) Maria Paloma S. Barros et al. PLoS One
- Degenerate target sites mediate rapid primed CRISPR adaptation
- (2014) P. C. Fineran et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Supplement 2008–2010 (no. 48) to the White–Kauffmann–Le Minor scheme
- (2014) Sylvie Issenhuth-Jeanjean et al. RESEARCH IN MICROBIOLOGY
- The new frontier of genome engineering with CRISPR-Cas9
- (2014) J. A. Doudna et al. SCIENCE
- CRISPR Is an Optimal Target for the Design of Specific PCR Assays for Salmonella enterica Serotypes Typhi and Paratyphi A
- (2014) Laetitia Fabre et al. PLoS Neglected Tropical Diseases
- The evolutionary history and diagnostic utility of the CRISPR-Cas system withinSalmonella entericassp.enterica
- (2014) James B. Pettengill et al. PeerJ
- The Subtleties and Contrasts of the LeuO Regulator in Salmonella Typhi: Implications in the Immune Response
- (2014) Carmen Guadarrama et al. Frontiers in Immunology
- The Intestinal Microbiome in Early Life: Health and Disease
- (2014) Marie-Claire Arrieta et al. Frontiers in Immunology
- CRISPR-Mediated Adaptive Immune Systems in Bacteria and Archaea
- (2013) Rotem Sorek et al. Annual Review of Biochemistry
- Antibiotic Resistance in Salmonella enterica Serovar Typhimurium Associates with CRISPR Sequence Type
- (2013) Michael DiMarzio et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Association of Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) Elements with Specific Serotypes and Virulence Potential of Shiga Toxin-Producing Escherichia coli
- (2013) Magaly Toro et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- The Evolutionary Divergence of Shiga Toxin-Producing Escherichia coli Is Reflected in Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) Spacer Composition
- (2013) Shuang Yin et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Use of a promiscuous, constitutively-active bacterial enhancer-binding protein to define the σ54 (RpoN) regulon of Salmonella Typhimurium LT2
- (2013) David J Samuels et al. BMC GENOMICS
- CRISPR-MVLST subtyping of Salmonella enterica subsp. enterica serovars Typhimurium and Heidelberg and application in identifying outbreak isolates
- (2013) Nikki Shariat et al. BMC MICROBIOLOGY
- In vitro reconstitution of Cascade-mediated CRISPR immunity in Streptococcus thermophilus
- (2013) Tomas Sinkunas et al. EMBO JOURNAL
- Phylogenetic Diversity of the Enteric Pathogen Salmonella enterica subsp. enterica Inferred from Genome-Wide Reference-Free SNP Characters
- (2013) Ruth E. Timme et al. Genome Biology and Evolution
- Uropathogenic Escherichia coli are less likely than paired fecal E. coli to have CRISPR loci
- (2013) Trang Nguyen Doan Dang et al. INFECTION GENETICS AND EVOLUTION
- In VitroReconstitution of anEscherichia coliRNA-guided Immune System Reveals Unidirectional, ATP-dependent Degradation of DNA Target
- (2013) Sabin Mulepati et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Subtyping of Salmonella enterica Serovar Newport Outbreak Isolates by CRISPR-MVLST and Determination of the Relationship between CRISPR-MVLST and PFGE Results
- (2013) N. Shariat et al. JOURNAL OF CLINICAL MICROBIOLOGY
- DNA motifs determining the efficiency of adaptation into the Escherichia coli CRISPR array
- (2013) I. Yosef et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- CRISPRTarget
- (2013) Ambarish Biswas et al. RNA Biology
- Phylogenetic position and virulence apparatus of the pear flower necrosis pathogen Erwinia piriflorinigrans CFBP 5888T as assessed by comparative genomics
- (2013) Theo H.M. Smits et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
- Cytotoxic Chromosomal Targeting by CRISPR/Cas Systems Can Reshape Bacterial Genomes and Expel or Remodel Pathogenicity Islands
- (2013) Reuben B. Vercoe et al. PLoS Genetics
- The combination of CRISPR-MVLST and PFGE provides increased discriminatory power for differentiating human clinical isolates of Salmonella enterica subsp. enterica serovar Enteritidis
- (2012) Nikki Shariat et al. FOOD MICROBIOLOGY
- Use of Clustered Regularly Interspaced Short Palindromic Repeat Sequence Polymorphisms for Specific Detection of Enterohemorrhagic Escherichia coli Strains of Serotypes O26:H11, O45:H2, O103:H2, O111:H8, O121:H19, O145:H28, and O157:H7 by Real-Time PCR
- (2012) S. Delannoy et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Specific Detection of Enteroaggregative Hemorrhagic Escherichia coli O104:H4 Strains by Use of the CRISPR Locus as a Target for a Diagnostic Real-Time PCR
- (2012) S. Delannoy et al. JOURNAL OF CLINICAL MICROBIOLOGY
- CRISPR Immunity Relies on the Consecutive Binding and Degradation of Negatively Supercoiled Invader DNA by Cascade and Cas3
- (2012) Edze R. Westra et al. MOLECULAR CELL
- Mechanism of Foreign DNA Selection in a Bacterial Adaptive Immune System
- (2012) Dipali G. Sashital et al. MOLECULAR CELL
- Proteins and DNA elements essential for the CRISPR adaptation process in Escherichia coli
- (2012) Ido Yosef et al. NUCLEIC ACIDS RESEARCH
- Pectobacterium spp. Associated with Bacterial Stem Rot Syndrome of Potato in Canada
- (2012) S. H. De Boer et al. PHYTOPATHOLOGY
- Yersinia pestis Lineages in Mongolia
- (2012) Julia M. Riehm et al. PLoS One
- CRISPR Interference Directs Strand Specific Spacer Acquisition
- (2012) Daan C. Swarts et al. PLoS One
- CRISPR Typing and Subtyping for Improved Laboratory Surveillance of Salmonella Infections
- (2012) Laëtitia Fabre et al. PLoS One
- Erwinia amylovora CRISPR Elements Provide New Tools for Evaluating Strain Diversity and for Microbial Source Tracking
- (2012) Gayle C. McGhee et al. PLoS One
- In Vivo Protein Interactions and Complex Formation in the Pectobacterium atrosepticum Subtype I-F CRISPR/Cas System
- (2012) Corinna Richter et al. PLoS One
- Molecular memory of prior infections activates the CRISPR/Cas adaptive bacterial immunity system
- (2012) Kirill A. Datsenko et al. Nature Communications
- Typhoid fever and paratyphoid fever: Systematic review to estimate global morbidity and mortality for 2010
- (2012) Geoffrey C. Buckle et al. Journal of Global Health
- Novel Virulence Gene and Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) Multilocus Sequence Typing Scheme for Subtyping of the Major Serovars ofSalmonella entericasubsp.enterica
- (2011) Fenyun Liu et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Subtyping Salmonella enterica Serovar Enteritidis Isolates from Different Sources by Using Sequence Typing Based on Virulence Genes and Clustered Regularly Interspaced Short Palindromic Repeats (CRISPRs)
- (2011) Fenyun Liu et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Diversity, Evolution, and Functionality of Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) Regions in the Fire Blight Pathogen Erwinia amylovora
- (2011) Fabio Rezzonico et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Helicase dissociation and annealing of RNA-DNA hybrids byEscherichia coliCas3 protein
- (2011) Jamieson A. L. Howard et al. BIOCHEMICAL JOURNAL
- Clustered regularly interspaced short palindromic repeats (CRISPRs): the hallmark of an ingenious antiviral defense mechanism in prokaryotes
- (2011) Sinan Al-Attar et al. BIOLOGICAL CHEMISTRY
- Cas3 is a single-stranded DNA nuclease and ATP-dependent helicase in the CRISPR/Cas immune system
- (2011) Tomas Sinkunas et al. EMBO JOURNAL
- CRISPR Distribution within the Escherichia coli Species Is Not Suggestive of Immunity-Associated Diversifying Selection
- (2011) M. Touchon et al. JOURNAL OF BACTERIOLOGY
- The CRISPR/Cas Immune System Is an Operon Regulated by LeuO, H-NS, and Leucine-Responsive Regulatory Protein in Salmonella enterica Serovar Typhi
- (2011) L. Medina-Aparicio et al. JOURNAL OF BACTERIOLOGY
- Comparative Genomics of 28 Salmonella enterica Isolates: Evidence for CRISPR-Mediated Adaptive Sublineage Evolution
- (2011) W. F. Fricke et al. JOURNAL OF BACTERIOLOGY
- Structural and Biochemical Analysis of Nuclease Domain of Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR)-associated Protein 3 (Cas3)
- (2011) Sabin Mulepati et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Structures of the RNA-guided surveillance complex from a bacterial immune system
- (2011) Blake Wiedenheft et al. NATURE
- Evolution and classification of the CRISPR–Cas systems
- (2011) Kira S. Makarova et al. NATURE REVIEWS MICROBIOLOGY
- An RNA-induced conformational change required for CRISPR RNA cleavage by the endoribonuclease Cse3
- (2011) Dipali G Sashital et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Structural basis for CRISPR RNA-guided DNA recognition by Cascade
- (2011) Matthijs M Jore et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Control of blackleg and tuber soft rot of potato caused by Pectobacterium and Dickeya species: a review
- (2011) R. Czajkowski et al. PLANT PATHOLOGY
- Phage Encoded H-NS: A Potential Achilles Heel in the Bacterial Defence System
- (2011) Connor T. Skennerton et al. PLoS One
- High-temperature protein G is essential for activity of the Escherichia coli clustered regularly interspaced short palindromic repeats (CRISPR)/Cas system
- (2011) I. Yosef et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- RNA-guided complex from a bacterial immune system enhances target recognition through seed sequence interactions
- (2011) B. Wiedenheft et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Csy4 is responsible for CRISPR RNA processing inPectobacterium atrosepticum
- (2011) Rita Przybilski et al. RNA Biology
- Diversity of CRISPR loci in Escherichia coli
- (2010) MICROBIOLOGY-SGM
- A dual function of the CRISPR-Cas system in bacterial antivirus immunity and DNA repair
- (2010) Mohan Babu et al. MOLECULAR MICROBIOLOGY
- Envelope stress is a trigger of CRISPR RNA-mediated DNA silencing in Escherichia coli
- (2010) Ritsdeliz Perez-Rodriguez et al. MOLECULAR MICROBIOLOGY
- Transcription, processing and function of CRISPR cassettes in Escherichia coli
- (2010) Ksenia Pougach et al. MOLECULAR MICROBIOLOGY
- Identification and characterization ofE. coliCRISPR-caspromoters and their silencing by H-NS
- (2010) Ümit Pul et al. MOLECULAR MICROBIOLOGY
- H-NS-mediated repression of CRISPR-based immunity in Escherichia coli K12 can be relieved by the transcription activator LeuO
- (2010) Edze R. Westra et al. MOLECULAR MICROBIOLOGY
- The Small, Slow and Specialized CRISPR and Anti-CRISPR of Escherichia and Salmonella
- (2010) Marie Touchon et al. PLoS One
- Sequence- and Structure-Specific RNA Processing by a CRISPR Endonuclease
- (2010) Rachel E. Haurwitz et al. SCIENCE
- Short motif sequences determine the targets of the prokaryotic CRISPR defence system
- (2009) MICROBIOLOGY-SGM
- Structural Basis for DNase Activity of a Conserved Protein Implicated in CRISPR-Mediated Genome Defense
- (2009) Blake Wiedenheft et al. STRUCTURE
- Leucine-Responsive Regulatory Protein (Lrp) Acts as a Virulence Repressor in Salmonella enterica Serovar Typhimurium
- (2008) C.-H. Baek et al. JOURNAL OF BACTERIOLOGY
- A Novel Family of Sequence-specific Endoribonucleases Associated with the Clustered Regularly Interspaced Short Palindromic Repeats
- (2008) Natalia Beloglazova et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Polymerase Chain Reaction Fingerprinting ofErwinia amylovorahas a Limited Phylogenetic Value but Allows the Design of Highly Specific Molecular Markers
- (2008) Arantza Rico et al. PHYTOPATHOLOGY
- Insight into Microevolution of Yersinia pestis by Clustered Regularly Interspaced Short Palindromic Repeats
- (2008) Yujun Cui et al. PLoS One
- Small CRISPR RNAs Guide Antiviral Defense in Prokaryotes
- (2008) S. J. J. Brouns et al. SCIENCE
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started