Transcriptome and Cell Physiological Analyses in Different Rice Cultivars Provide New Insights Into Adaptive and Salinity Stress Responses

Innovative Approaches to Evaluate Sugar Beet Responses to Changes in Sulfate Availability

(2018) Piergiorgio Stevanato et al.   Frontiers in Plant Science

Stress-induced senescence and plant tolerance to abiotic stress

(2017) Nir Sade et al.   JOURNAL OF EXPERIMENTAL BOTANY

OsHKT1;5 mediates Na+ exclusion in the vasculature to protect leaf blades and reproductive tissues from salt toxicity in rice

(2017) Natsuko I. Kobayashi et al.   PLANT JOURNAL

Orchestrating rapid long-distance signaling in plants with Ca2+ , ROS and electrical signals

(2017) Won-Gyu Choi et al.   PLANT JOURNAL

Salt Tolerance in Crops: Not Only a Matter of Gene Regulation

(2017) Elide Formentin   PLANT PHYSIOLOGY

Pathway Inspector: a pathway based web application for RNAseq analysis of model and non-model organisms

(2016) Luca Bianco et al.   BIOINFORMATICS

Abiotic Stress Signaling and Responses in Plants

(2016) Jian-Kang Zhu   CELL

BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences

(2016) Minoru Kanehisa et al.   JOURNAL OF MOLECULAR BIOLOGY

Enhancing protein function prediction with taxonomic constraints – The Argot2.5 web server

(2016) Enrico Lavezzo et al.   METHODS

A ROS-Assisted Calcium Wave Dependent on the AtRBOHD NADPH Oxidase and TPC1 Cation Channel Propagates the Systemic Response to Salt Stress

(2016) Matthew J. Evans et al.   PLANT PHYSIOLOGY

Eliciting the Functional Taxonomy from protein annotations and taxa

(2016) Marco Falda et al.   Scientific Reports

Enhanced Salt Tolerance Conferred by the Complete 2.3 kb cDNA of the Rice Vacuolar Na+/H+ Antiporter Gene Compared to 1.9 kb Coding Region with 5′ UTR in Transgenic Lines of Rice

(2016) U. S. M. Amin et al.   Frontiers in Plant Science

New Insights on Plant Salt Tolerance Mechanisms and Their Potential Use for Breeding

(2016) Moez Hanin et al.   Frontiers in Plant Science

Genome-wide survey and expression analysis of the OSCA gene family in rice

(2015) Yunshuang Li et al.   BMC PLANT BIOLOGY

Genetic mechanisms of abiotic stress tolerance that translate to crop yield stability

(2015) Michael V. Mickelbart et al.   NATURE REVIEWS GENETICS

Overexpression of the potassium channel TPKb in small vacuoles confers osmotic and drought tolerance to rice

(2015) Izhar Ahmad et al.   NEW PHYTOLOGIST

Salinity tolerance of crops - what is the cost?

(2015) Rana Munns et al.   NEW PHYTOLOGIST

The plasma membrane NADPH oxidase OsRbohA plays a crucial role in developmental regulation and drought-stress response in rice

(2015) Xiang Wang et al.   PHYSIOLOGIA PLANTARUM

Light stress and photoprotection in Chlamydomonas reinhardtii

(2015) Erika Erickson et al.   PLANT JOURNAL

Tuning plant signaling and growth to survive salt

(2015) Magdalena M. Julkowska et al.   TRENDS IN PLANT SCIENCE

Plant signaling networks involving Ca2+ and Rboh/Nox-mediated ROS production under salinity stress

(2015) Takamitsu Kurusu et al.   Frontiers in Plant Science

ROS Regulation During Abiotic Stress Responses in Crop Plants

(2015) Jun You et al.   Frontiers in Plant Science

Reducing bias in RNA sequencing data: a novel approach to compute counts

(2014) Francesca Finotello et al.   BMC BIOINFORMATICS

Production of superoxide from Photosystem II in a rice (Oryza sativaL.) mutant lacking PsbS

(2014) Ismayil S Zulfugarov et al.   BMC PLANT BIOLOGY

Salt resistant crop plants

(2014) Stuart J Roy et al.   CURRENT OPINION IN BIOTECHNOLOGY

OSCA1 mediates osmotic-stress-evoked Ca2+ increases vital for osmosensing in Arabidopsis

(2014) Fang Yuan et al.   NATURE

A tidal wave of signals: calcium and ROS at the forefront of rapid systemic signaling

(2014) Simon Gilroy et al.   TRENDS IN PLANT SCIENCE

voom: precision weights unlock linear model analysis tools for RNA-seq read counts

(2014) Charity W Law et al.   GENOME BIOLOGY

Salinity tolerance, Na+ exclusion and allele mining of HKT1;5 in Oryza sativa and O. glaberrima: many sources, many genes, one mechanism?

(2013) John Damien Platten et al.   BMC PLANT BIOLOGY

Count-based differential expression analysis of RNA sequencing data using R and Bioconductor

(2013) Simon Anders et al.   Nature Protocols

SALT-RESPONSIVE ERF1 Regulates Reactive Oxygen Species-Dependent Signaling during the Initial Response to Salt Stress in Rice

(2013) R. Schmidt et al.   PLANT CELL

Calcium-dependent protein kinase/NADPH oxidase activation circuit is required for rapid defense signal propagation

(2013) U. Dubiella et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential Expression Analysis for Pathways

(2013) Winston A. Haynes et al.   PLoS Computational Biology

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Argot2: a large scale function prediction tool relying on semantic similarity of weighted Gene Ontology terms

(2012) Marco Falda et al.   BMC BIOINFORMATICS

graphite - a Bioconductor package to convert pathway topology to gene network

(2012) Gabriele Sales et al.   BMC BIOINFORMATICS

ROS-mediated vascular homeostatic control of root-to-shoot soil Na delivery inArabidopsis

(2012) Caifu Jiang et al.   EMBO JOURNAL

Enhancement of Non-Photochemical Quenching in the Bryophyte Physcomitrella patens During Acclimation to Salt and Osmotic Stress

(2012) Ghazi Azzabi et al.   PLANT AND CELL PHYSIOLOGY

Ion Exchangers NHX1 and NHX2 Mediate Active Potassium Uptake into Vacuoles to Regulate Cell Turgor and Stomatal Function in Arabidopsis

(2012) V. Barragan et al.   PLANT CELL

HKT2;2/1, a K+-permeable transporter identified in a salt-tolerant rice cultivar through surveys of natural genetic polymorphism

(2012) Ronald J.F.J. Oomen et al.   PLANT JOURNAL

A Two-Staged Model of Na+ Exclusion in Rice Explained by 3D Modeling of HKT Transporters and Alternative Splicing

(2012) Olivier Cotsaftis et al.   PLoS One

Expression of OsDREB2A transcription factor confers enhanced dehydration and salt stress tolerance in rice (Oryza sativa L.)

(2011) Garladinne Mallikarjuna et al.   BIOTECHNOLOGY LETTERS

The grapevine guard cell-related VvMYB60 transcription factor is involved in the regulation of stomatal activity and is differentially expressed in response to ABA and osmotic stress

(2011) Massimo Galbiati et al.   BMC PLANT BIOLOGY

Roles of xanthophylls and exogenous ABA in protection against NaCl-induced photodamage in rice (Oryza sativa L) and cabbage (Brassica campestris)

(2011) S.-Q. Zhu et al.   JOURNAL OF EXPERIMENTAL BOTANY

NADPH oxidase AtrbohD and AtrbohF function in ROS-dependent regulation of Na+/K+ homeostasis in Arabidopsis under salt stress

(2011) Liya Ma et al.   JOURNAL OF EXPERIMENTAL BOTANY

Vacuolar two-pore K+ channels act as vacuolar osmosensors

(2011) Frans J. M. Maathuis   NEW PHYTOLOGIST

Targeted association analysis identified japonica rice varieties achieving Na+/K+ homeostasis without the allelic make-up of the salt tolerant indica variety Nona Bokra

(2011) N. Ahmadi et al.   THEORETICAL AND APPLIED GENETICS

ROS signaling: the new wave?

(2011) Ron Mittler et al.   TRENDS IN PLANT SCIENCE

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

OVP1, a Vacuolar H+-translocating inorganic pyrophosphatase (V-PPase), overexpression improved rice cold tolerance

(2010) Juan Zhang et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Molecular and functional analyses of rice NHX-type Na+/H+ antiporter genes

(2010) Atsunori Fukuda et al.   PLANTA

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

NaCl-induced expression of glutathione reductase in roots of rice (Oryza sativa L.) seedlings is mediated through hydrogen peroxide but not abscisic acid

(2009) Chwan-Yang Hong et al.   PLANT AND SOIL

Reactive oxygen species homeostasis and signalling during drought and salinity stresses

(2009) GAD MILLER et al.   PLANT CELL AND ENVIRONMENT

Overexpressed glutamine synthetase gene modifies nitrogen metabolism and abiotic stress responses in rice

(2009) Hongmei Cai et al.   PLANT CELL REPORTS

Mechanisms of Salinity Tolerance

(2008) Rana Munns et al.   Annual Review of Plant Biology

Contrasting Responses of Photosynthesis to Salt Stress in the Glycophyte Arabidopsis and the Halophyte Thellungiella: Role of the Plastid Terminal Oxidase as an Alternative Electron Sink

(2008) P. Stepien et al.   PLANT PHYSIOLOGY