Spaceflight Modifies Escherichia coli Gene Expression in Response to Antibiotic Exposure and Reveals Role of Oxidative Stress Response

Phenotypic Changes Exhibited by E. coli Cultured in Space

(2017) Luis Zea et al.   Frontiers in Microbiology

Transcriptome-Level Signatures in Gene Expression and Gene Expression Variability during Bacterial Adaptive Evolution

(2017) Keesha E. Erickson et al.   mSphere

PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements

(2016) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

A Molecular Genetic Basis Explaining Altered Bacterial Behavior in Space

(2016) Luis Zea et al.   PLoS One

CRISPR Perturbation of Gene Expression Alters Bacterial Fitness under Stress and Reveals Underlying Epistatic Constraints

(2016) Peter B. Otoupal et al.   ACS Synthetic Biology

Gene Expression Variability Underlies Adaptive Resistance in Phenotypically Heterogeneous Bacterial Populations

(2015) Keesha E. Erickson et al.   ACS Infectious Diseases

Overproduction of AcrR increases organic solvent tolerance mediated by modulation of SoxS regulon in Escherichia coli

(2014) Jae Ok Lee et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Toxin YafQ increases persister cell formation by reducing indole signalling

(2014) Ying Hu et al.   ENVIRONMENTAL MICROBIOLOGY

Antibiotics induce redox-related physiological alterations as part of their lethality

(2014) D. J. Dwyer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Epigenetic epistatic interactions constrain the evolution of gene expression

(2013) S. Park et al.   Molecular Systems Biology

Spaceflight Promotes Biofilm Formation by Pseudomonas aeruginosa

(2013) Wooseong Kim et al.   PLoS One

Regulators of oxidative stress response genes in Escherichia coli and their functional conservation in bacteria

(2012) Sarah M. Chiang et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

Signaling-mediated bacterial persister formation

(2012) Nicole M Vega et al.   Nature Chemical Biology

Transcriptional regulation of main metabolic pathways of cyoA, cydB, fnr, and fur gene knockout Escherichia coli in C-limited and N-limited aerobic continuous cultures

(2011) Rahul Kumar et al.   Microbial Cell Factories

The SoxRS response of Escherichia coli is directly activated by redox-cycling drugs rather than by superoxide

(2011) Mianzhi Gu et al.   MOLECULAR MICROBIOLOGY

Variance of Gene Expression Identifies Altered Network Constraints in Neurological Disease

(2011) Jessica C. Mar et al.   PLoS Genetics

Transcriptional and Proteomic Responses ofPseudomonas aeruginosaPAO1 to Spaceflight Conditions Involve Hfq Regulation and Reveal a Role for Oxygen

(2010) Aurélie Crabbé et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Environmental factors affecting indole production in Escherichia coli

(2010) Thi Hiep Han et al.   RESEARCH IN MICROBIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Differential variability analysis of gene expression and its application to human diseases

(2008) J. W.K. Ho et al.   BIOINFORMATICS

Media Ion Composition Controls Regulatory and Virulence Response of Salmonella in Spaceflight

(2008) James W. Wilson et al.   PLoS One