Comparative Genomic Analysis of a Clinical Isolate of Klebsiella quasipneumoniae subsp. similipneumoniae, a KPC-2 and OKP-B-6 Beta-Lactamases Producer Harboring Two Drug-Resistance Plasmids from Southeast Brazil

Metabolic diversity of the emerging pathogenic lineages of Klebsiella pneumoniae

(2017) Camille Blin et al.   ENVIRONMENTAL MICROBIOLOGY

High frequency of silver resistance genes in invasive isolates of Enterobacter and Klebsiella species

(2017) S. Sütterlin et al.   JOURNAL OF HOSPITAL INFECTION

Draft genome of a hypervirulent Klebsiella quasipneumoniae subsp. similipneumoniae with novel sequence type ST2320 isolated from a chronic liver disease patient

(2017) Chaitra Shankar et al.   Journal of Global Antimicrobial Resistance

Whole-Genome Sequencing of Human Clinical Klebsiella pneumoniae Isolates Reveals Misidentification and Misunderstandings of Klebsiella pneumoniae , Klebsiella variicola , and Klebsiella quasipneumoniae

(2017) S. Wesley Long et al.   mSphere

Carbapenemase-producing Enterobacteriaceae recovered from the environment of a swine farrow-to-finish operation in the United States

(2016) Dixie F. Mollenkopf et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Performance of Vitek 2 for Antimicrobial Susceptibility Testing of Acinetobacter baumannii, Pseudomonas aeruginosa, and Stenotrophomonas maltophilia with Vitek 2 (2009 FDA) and CLSI M100S 26th Edition Breakpoints

(2016) April M. Bobenchik et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Klebsiella pneumoniae: Going on the Offense with a Strong Defense

(2016) Michelle K. Paczosa et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database

(2016) Baofeng Jia et al.   NUCLEIC ACIDS RESEARCH

InterPro in 2017—beyond protein family and domain annotations

(2016) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Plasmid Dynamics in KPC-Positive Klebsiella pneumoniae during Long-Term Patient Colonization

(2016) Sean Conlan et al.   mBio

Meeting report: GenBank microbial genomic taxonomy workshop (12–13 May, 2015)

(2016) Scott Federhen et al.   Standards in Genomic Sciences

Characterization of BKC-1 Class A Carbapenemase from Klebsiella pneumoniae Clinical Isolates in Brazil

(2015) Adriana Giannini Nicoletti et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison

(2015) Michael Richter et al.   BIOINFORMATICS

Development of a Multiplex-PCR probe system for the proper identification of Klebsiella variicola

(2015) Ulises Garza-Ramos et al.   BMC MICROBIOLOGY

Silver resistance in Gram-negative bacteria: a dissection of endogenous and exogenous mechanisms

(2015) C. P. Randall et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Bacterial microcompartments: widespread prokaryotic organelles for isolation and optimization of metabolic pathways

(2015) Thomas A. Bobik et al.   MOLECULAR MICROBIOLOGY

Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance inKlebsiella pneumoniae, an urgent threat to public health

(2015) Kathryn E. Holt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The extended regulatory networks of SXT/R391 integrative and conjugative elements and IncA/C conjugative plasmids

(2015) Dominic Poulin-Laprade et al.   Frontiers in Microbiology

Genomic and Functional Characterization of qnr-Encoding Plasmids from Municipal Wastewater Biosolid Klebsiella pneumoniae Isolates

(2015) Ella Kaplan et al.   Frontiers in Microbiology

Production of novel NaN3-resistant creatine amidinohydrolase in recombinantEscherichia coli

(2015) Song Liu et al.   Bioengineered

In SilicoDetection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

(2014) Alessandra Carattoli et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Comparative analysis of the complete genome of KPC-2-producing Klebsiella pneumoniae Kp13 reveals remarkable genome plasticity and a wide repertoire of virulence and resistance mechanisms

(2014) Pablo Ivan Pereira Ramos et al.   BMC GENOMICS

Description of Klebsiella quasipneumoniae sp. nov., isolated from human infections, with two subspecies, Klebsiella quasipneumoniae subsp. quasipneumoniae subsp. nov. and Klebsiella quasipneumoniae subsp. similipneumoniae subsp. nov., and demonstration that Klebsiella singaporensis is a junior heterotypic synonym of Klebsiella variicola

(2014) S. Brisse et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Origin in Acinetobacter guillouiae and Dissemination of the Aminoglycoside-Modifying Enzyme Aph(3')-VI

(2014) E.-J. Yoon et al.   mBio

wzi Gene Sequencing, a Rapid Method for Determination of Capsular Type for Klebsiella Strains

(2013) S. Brisse et al.   JOURNAL OF CLINICAL MICROBIOLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Organophosphonates revealed: new insights into the microbial metabolism of ancient molecules

(2013) John W. McGrath et al.   NATURE REVIEWS MICROBIOLOGY

AtlasT4SS: A curated database for type IV secretion systems

(2012) Rangel C Souza et al.   BMC MICROBIOLOGY

Identification of acquired antimicrobial resistance genes

(2012) E. Zankari et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Complete Genome Sequence of Klebsiella pneumoniae 1084, a Hypermucoviscosity-Negative K1 Clinical Strain

(2012) A.-C. Lin et al.   JOURNAL OF BACTERIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Toward almost closed genomes with GapFiller

(2012) Marten Boetzer et al.   GENOME BIOLOGY

Proteinortho: Detection of (Co-)orthologs in large-scale analysis

(2011) Marcus Lechner et al.   BMC BIOINFORMATICS

Assessment of hypermucoviscosity as a virulence factor for experimental Klebsiella pneumoniae infections: comparative virulence analysis with hypermucoviscosity-negative strain

(2011) Yi-Chun Lin et al.   BMC MICROBIOLOGY

Plasmids in Gram negatives: Molecular typing of resistance plasmids

(2011) Alessandra Carattoli   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Self-Transmissibility of the Integrative and Conjugative Element ICEPm1 between Clinical Isolates Requires a Functional Integrase, Relaxase, and Type IV Secretion System

(2011) E. L. Flannery et al.   JOURNAL OF BACTERIOLOGY

Intestinal inflammation allows Salmonella to use ethanolamine to compete with the microbiota

(2011) P. Thiennimitr et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Interactive microbial genome visualization with GView

(2010) Aaron Petkau et al.   BIOINFORMATICS

MST (Molecular Serotyping Tool): a Program for Computer-Assisted Molecular Identification of Escherichia coli and Shigella O Antigens

(2010) R. S. Coimbra et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Characterization of the ars Gene Cluster from Extremely Arsenic-Resistant Microbacterium sp. Strain A33

(2009) A. Achour-Rokbani et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Identification of a Modular Pathogenicity Island That Is Widespread among Urease-Producing Uropathogens and Shares Features with a Diverse Group of Mobile Elements

(2009) E. L. Flannery et al.   INFECTION AND IMMUNITY

Citrate Utilization by Corynebacterium glutamicum Is Controlled by the CitAB Two-Component System through Positive Regulation of the Citrate Transport Genes citH and tctCBA

(2009) M. Brocker et al.   JOURNAL OF BACTERIOLOGY

Genome Sequencing and Comparative Analysis of Klebsiella pneumoniae NTUH-K2044, a Strain Causing Liver Abscess and Meningitis

(2009) K.-M. Wu et al.   JOURNAL OF BACTERIOLOGY

Replication and conjugative mobilization of broad host-range IncQ plasmids

(2009) Richard Meyer   PLASMID

Defining, treating and preventing hospital acquired pneumonia: European perspective

(2008) Antoni Torres et al.   INTENSIVE CARE MEDICINE

ARDB--Antibiotic Resistance Genes Database

(2008) B. Liu et al.   NUCLEIC ACIDS RESEARCH