Nitrosospira sp. Govern Nitrous Oxide Emissions in a Tropical Soil Amended With Residues of Bioenergy Crop

Nitrifier-induced denitrification is an important source of soil nitrous oxide and can be inhibited by a nitrification inhibitor 3,4-dimethylpyrazole phosphate

(2017) Xiuzhen Shi et al.   ENVIRONMENTAL MICROBIOLOGY

Sources and sinks for N2 O, can microbiologist help to mitigate N2 O emissions?

(2017) Lars R. Bakken et al.   ENVIRONMENTAL MICROBIOLOGY

Ammonia-oxidizing bacteria rather than archaea respond to short-term urea amendment in an alpine grassland

(2017) Xingjia Xiang et al.   SOIL BIOLOGY & BIOCHEMISTRY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Nitrosomonas europaeacytochrome P460 is a direct link between nitrification and nitrous oxide emission

(2016) Jonathan D. Caranto et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global biogeography of microbial nitrogen-cycling traits in soil

(2016) Michaeline B. Nelson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ammonia-oxidizing bacteria are more responsive than archaea to nitrogen source in an agricultural soil

(2016) Yang Ouyang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Nitrous oxide emission related to ammonia-oxidizing bacteria and mitigation options from N fertilization in a tropical soil

(2016) Johnny R. Soares et al.   Scientific Reports

Nitrous Oxide and Methane Fluxes Following Ammonium Sulfate and Vinasse Application on Sugar Cane Soil

(2015) Debora da S. Paredes et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Exploring soil microbial 16S rRNA sequence data to increase carbon yield and nitrogen efficiency of a bioenergy crop

(2015) Leonardo M. Pitombo et al.   Global Change Biology Bioenergy

Direct N2O emission factors for synthetic N-fertilizer and organic residues applied on sugarcane for bioethanol production in Central-Southern Brazil

(2015) Marcos Siqueira Neto et al.   Global Change Biology Bioenergy

Complete nitrification by a single microorganism

(2015) Maartje A. H. J. van Kessel et al.   NATURE

Complete nitrification by Nitrospira bacteria

(2015) Holger Daims et al.   NATURE

Implementing a Class of Permutation Tests: ThecoinPackage

(2015) Torsten Hothorn et al.   Journal of Statistical Software

UProC: tools for ultra-fast protein domain classification

(2014) Peter Meinicke   BIOINFORMATICS

Implications of stillage land disposal: A critical review on the impacts of fertigation

(2014) Lucas Tadeu Fuess et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Effect of soil moisture status and a nitrification inhibitor, dicyandiamide, on ammonia oxidizer and denitrifier growth and nitrous oxide emissions in a grassland soil

(2014) Hong J. Di et al.   SOIL BIOLOGY & BIOCHEMISTRY

Nitrous oxide emission and ammonia volatilization induced by vinasse and N fertilizer application in a sugarcane crop at Rio de Janeiro, Brazil

(2013) Débora da Silva Paredes et al.   NUTRIENT CYCLING IN AGROECOSYSTEMS

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Ammonia oxidation pathways and nitrifier denitrification are significant sources of N2O and NO under low oxygen availability

(2013) X. Zhu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sugarcane vinasse: Environmental implications of its use

(2013) Cintya Aparecida Christofoletti et al.   WASTE MANAGEMENT

Ammonia-oxidizer communities in an agricultural soil treated with contrasting nitrogen sources

(2013) Mussie Y. Habteselassie et al.   Frontiers in Microbiology

FunGene: the functional gene pipeline and repository

(2013) Jordan A. Fish et al.   Frontiers in Microbiology

N2O and N2 production during heterotrophic nitrification by Alcaligenes faecalis strain NR

(2012) Bin Zhao et al.   BIORESOURCE TECHNOLOGY

Infield greenhouse gas emissions from sugarcane soils in Brazil: effects from synthetic and organic fertilizer application and crop trash accumulation

(2012) Janaina Braga do Carmo et al.   Global Change Biology Bioenergy

The unaccounted yet abundant nitrous oxide-reducing microbial community: a potential nitrous oxide sink

(2012) Christopher M Jones et al.   ISME Journal

Cascade multivariate regression tree: a novel approach for modelling nested explanatory sets

(2012) Marie-Hélène Ouellette et al.   Methods in Ecology and Evolution

Greenhouse gas balance due to the conversion of sugarcane areas from burned to green harvest in Brazil

(2011) Eduardo Barretto De Figueiredo et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Life cycle assessment of Brazilian sugarcane products: GHG emissions and energy use

(2011) Joaquim E. A. Seabra et al.   Biofuels Bioproducts & Biorefining-Biofpr

Ammonia concentration determines differential growth of ammonia-oxidising archaea and bacteria in soil microcosms

(2011) Daniel T Verhamme et al.   ISME Journal

Formation of hybrid N2O and hybrid N2 due to codenitrification: First review of a barely considered process of microbially mediated N-nitrosation

(2011) Oliver Spott et al.   SOIL BIOLOGY & BIOCHEMISTRY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Dynamics of ammonia-oxidizing communities in barley-planted bulk soil and rhizosphere following nitrate and ammonium fertilizer amendment

(2010) Katrin Glaser et al.   FEMS MICROBIOLOGY ECOLOGY

Net greenhouse gas fluxes in Brazilian ethanol production systems

(2010) MARCELO VALADARES GALDOS et al.   Global Change Biology Bioenergy

The Evolution and Future of Earth’s Nitrogen Cycle

(2010) Donald E. Canfield et al.   SCIENCE

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Variations in the cation exchange capacity of a ferralsol supplied with vinasse, under changing aeration conditions

(2009) P. Renault et al.   GEODERMA

Nitrous Oxide (N2O): The Dominant Ozone-Depleting Substance Emitted in the 21st Century

(2009) A. R. Ravishankara et al.   SCIENCE

Generalized linear mixed models: a practical guide for ecology and evolution

(2009) Benjamin M. Bolker et al.   TRENDS IN ECOLOGY & EVOLUTION

Green house gases emissions in the production and use of ethanol from sugarcane in Brazil: The 2005/2006 averages and a prediction for 2020

(2008) Isaias C. Macedo et al.   BIOMASS & BIOENERGY

Relationship between nitrifier and denitrifier community composition and abundance in predicting nitrous oxide emissions from ephemeral wetland soils

(2008) W.K. Ma et al.   SOIL BIOLOGY & BIOCHEMISTRY