Exploratory Analysis of the Microbiological Potential for Efficient Utilization of Fiber Between Lantang and Duroc Pigs

Enterococcus faecalis Uses a Phosphotransferase System Permease and a Host Colonization-Related ABC Transporter for Maltodextrin Uptake

(2017) Nicolas Sauvageot et al.   JOURNAL OF BACTERIOLOGY

In vitro fermentative capacity of swine large intestine: comparison between native Lantang and commercial Duroc breeds

(2016) Peng Hui Cheng et al.   ANIMAL SCIENCE JOURNAL

A reference gene catalogue of the pig gut microbiome

(2016) Liang Xiao et al.   Nature Microbiology

Barcoded pyrosequencing-based metagenomic analysis of the faecal microbiome of three purebred pig lines after cohabitation

(2015) Edward Alain B. Pajarillo et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Average genome size estimation improves comparative metagenomics and sheds light on the functional ecology of the human microbiome

(2015) Stephen Nayfach et al.   GENOME BIOLOGY

The Dynamic Distribution of Porcine Microbiota across Different Ages and Gastrointestinal Tract Segments

(2015) Wenjing Zhao et al.   PLoS One

Fermentable non-starch polysaccharides increases the abundance of Bacteroides–Prevotella–Porphyromonas in ileal microbial community of growing pigs

(2014) E. Ivarsson et al.   Animal

Pyrosequencing-based analysis of fecal microbial communities in three purebred pig lines

(2014) Edward Alain B. Pajarillo et al.   JOURNAL OF MICROBIOLOGY

An integrated catalog of reference genes in the human gut microbiome

(2014) Junhua Li et al.   NATURE BIOTECHNOLOGY

Discovery of β-1,4-d-Mannosyl-N-acetyl-d-glucosamine Phosphorylase Involved in the Metabolism ofN-Glycans

(2013) Takanori Nihira et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The abundance and variety of carbohydrate-active enzymes in the human gut microbiota

(2013) Abdessamad El Kaoutari et al.   NATURE REVIEWS MICROBIOLOGY

Inflammation-associated enterotypes, host genotype, cage and inter-individual effects drive gut microbiota variation in common laboratory mice

(2013) Falk Hildebrand et al.   GENOME BIOLOGY

Host genetic and environmental effects on mouse intestinal microbiota

(2012) James H Campbell et al.   ISME Journal

MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads

(2012) Toshiaki Namiki et al.   NUCLEIC ACIDS RESEARCH

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

(2012) Ravi K. Patel et al.   PLoS One

In-feed antibiotic effects on the swine intestinal microbiome

(2012) T. Looft et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Lean Breed Landrace Pigs Harbor Fecal Methanogens at Higher Diversity and Density than Obese Breed Erhualian Pigs

(2012) Yu-heng Luo et al.   ARCHAEA-AN INTERNATIONAL MICROBIOLOGICAL JOURNAL

The sequence and analysis of a Chinese pig genome

(2012) Xiaodong Fang et al.   GigaScience

Comparative fecal metagenomics unveils unique functional capacity of the swine gut

(2011) Regina Lamendella et al.   BMC MICROBIOLOGY

Longitudinal investigation of the age-related bacterial diversity in the feces of commercial pigs

(2011) Hyeun Bum Kim et al.   VETERINARY MICROBIOLOGY

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Functional metagenomics to mine the human gut microbiome for dietary fiber catabolic enzymes

(2010) L. Tasse et al.   GENOME RESEARCH

CAZymes Analysis Toolkit (CAT): Web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database

(2010) Byung H Park et al.   GLYCOBIOLOGY

Future of NSP-degrading enzymes to improve nutrient utilization of co-products and gut health in pigs

(2010) R.T. Zijlstra et al.   Livestock Science

FragGeneScan: predicting genes in short and error-prone reads

(2010) Mina Rho et al.   NUCLEIC ACIDS RESEARCH

Site and Strain-Specific Variation in Gut Microbiota Profiles and Metabolism in Experimental Mice

(2010) Melissa K. Friswell et al.   PLoS One

Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa

(2010) C. De Filippo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Are Rice and Spicy Diet Good for Functional Gastrointestinal Disorders?

(2010) Sutep Gonlachanvit   Journal of Neurogastroenterology and Motility

Sugar transporters in efficient utilization of mixed sugar substrates: current knowledge and outlook

(2009) Toru Jojima et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Bioprospecting metagenomes: glycosyl hydrolases for converting biomass

(2009) Luen-Luen Li et al.   Biotechnology for Biofuels

Fiber-related digestive processes in three different breeds of pigs12

(2009) E. von Heimendahl et al.   JOURNAL OF ANIMAL SCIENCE

The Effect of Diet on the Human Gut Microbiome: A Metagenomic Analysis in Humanized Gnotobiotic Mice

(2009) P. J. Turnbaugh et al.   Science Translational Medicine

BOARD-INVITED REVIEW: The use and application of distillers dried grains with solubles in swine diets

(2008) H. H. Stein et al.   JOURNAL OF ANIMAL SCIENCE

A core gut microbiome in obese and lean twins

(2008) Peter J. Turnbaugh et al.   NATURE