The effect of cell geometry on polarization in budding yeast

Mechanical feedback coordinates cell wall expansion and assembly in yeast mating morphogenesis

(2018) Samhita P. Banavar et al.   PLoS Computational Biology

Many roads to symmetry breaking: molecular mechanisms and theoretical models of yeast cell polarity

(2017) Andrew B. Goryachev et al.   MOLECULAR BIOLOGY OF THE CELL

A framework for discrete stochastic simulation on 3D moving boundary domains

(2016) Brian Drawert et al.   JOURNAL OF CHEMICAL PHYSICS

Geometry-induced protein pattern formation

(2016) Dominik Thalmeier et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Role of Polarized G Protein Signaling in Tracking Pheromone Gradients

(2015) Allison W. McClure et al.   DEVELOPMENTAL CELL

Dilution of the cell cycle inhibitor Whi5 controls budding-yeast cell size

(2015) Kurt M. Schmoller et al.   NATURE

Robust polarity establishment occurs via an endocytosis-based cortical corralling mechanism

(2013) Mini Jose et al.   JOURNAL OF CELL BIOLOGY

Single molecule simulations in complex geometries with embedded dynamic one-dimensional structures

(2013) Stefan Hellander   JOURNAL OF CHEMICAL PHYSICS

Establishment of a robust single axis of cell polarity by coupling multiple positive feedback loops

(2013) Tina Freisinger et al.   Nature Communications

Spatial Stochastic Dynamics Enable Robust Cell Polarization

(2013) Michael J. Lawson et al.   PLoS Computational Biology

GDI-Mediated Cell Polarization in Yeast Provides Precise Spatial and Temporal Control of Cdc42 Signaling

(2013) Ben Klünder et al.   PLoS Computational Biology

URDME: a modular framework for stochastic simulation of reaction-transport processes in complex geometries

(2012) Brian Drawert et al.   BMC Systems Biology

Tracking Shallow Chemical Gradients by Actin-Driven Wandering of the Polarization Site

(2012) Jayme M. Dyer et al.   CURRENT BIOLOGY

Mechanistic mathematical model of polarity in yeast

(2012) Natasha S. Savage et al.   MOLECULAR BIOLOGY OF THE CELL

Cell Polarity: Quantitative Modeling as a Tool in Cell Biology

(2012) A. Mogilner et al.   SCIENCE

Getting Cells and Tissues into Shape

(2011) David Odde   CELL

A Comparison of Mathematical Models for Polarization of Single Eukaryotic Cells in Response to Guided Cues

(2011) Alexandra Jilkine et al.   PLoS Computational Biology

A Density-Dependent Switch Drives Stochastic Clustering and Polarization of Signaling Molecules

(2011) Alexandra Jilkine et al.   PLoS Computational Biology

DOLFIN

(2010) Anders Logg et al.   ACM TRANSACTIONS ON MATHEMATICAL SOFTWARE

Gmsh: A 3-D finite element mesh generator with built-in pre- and post-processing facilities

(2009) Christophe Geuzaine et al.   INTERNATIONAL JOURNAL FOR NUMERICAL METHODS IN ENGINEERING

Simulation of Stochastic Reaction-Diffusion Processes on Unstructured Meshes

(2009) Stefan Engblom et al.   SIAM JOURNAL ON SCIENTIFIC COMPUTING

Cell Shape and Negative Links in Regulatory Motifs Together Control Spatial Information Flow in Signaling Networks

(2008) Susana R. Neves et al.   CELL

Dynamics of Cdc42 network embodies a Turing-type mechanism of yeast cell polarity

(2008) Andrew B. Goryachev et al.   FEBS LETTERS

On the spontaneous emergence of cell polarity

(2008) Steven J. Altschuler et al.   NATURE