Using molecular markers to investigate genetic diversity, mating system and gene flow of Neotropical trees

Allopatric speciation despite historical gene flow: Divergence and hybridization in Carex furva and C. lucennoiberica (Cyperaceae) inferred from plastid and nuclear RAD-seq data

(2017) Enrique Maguilla et al.   MOLECULAR ECOLOGY

Genetics and the conservation of natural populations: allozymes to genomes

(2017) Fred W. Allendorf   MOLECULAR ECOLOGY

Sympatric parallel diversification of major oak clades in the Americas and the origins of Mexican species diversity

(2017) Andrew L. Hipp et al.   NEW PHYTOLOGIST

Resolving Recent Plant Radiations: Power and Robustness of Genotyping-by-Sequencing

(2017) Mario Fernández-Mazuecos et al.   SYSTEMATIC BIOLOGY

Genome assembly of the Pink Ipê (Handroanthus impetiginosus, Bignoniaceae), a highly valued, ecologically keystone Neotropical timber forest tree

(2017) Orzenil Bonfim Silva-Junior et al.   GigaScience

Contemporary patterns of genetic diversity of cedrela fissilis offer insight into the shaping of seasonal forests in eastern South America

(2016) E. Mangaravite et al.   AMERICAN JOURNAL OF BOTANY

Inbreeding depression from selfing and mating between relatives in the Neotropical tree Cariniana legalis Mart. Kuntze

(2016) Evandro Vagner Tambarussi et al.   CONSERVATION GENETICS

Phylogeographic Studies Depict the Role of Space and Time Scales of Plant Speciation in a Highly Diverse Neotropical Region

(2016) Bárbara Simões Santos Leal et al.   CRITICAL REVIEWS IN PLANT SCIENCES

High selfing rate, limited pollen dispersal and inbreeding depression in the emblematic African rain forest tree Baillonella toxisperma – Management implications

(2016) J. Duminil et al.   FOREST ECOLOGY AND MANAGEMENT

Development of genomic tools in a widespread tropical tree, Symphonia globulifera L.f.: a new low-coverage draft genome, SNP and SSR markers

(2016) Sanna Olsson et al.   Molecular Ecology Resources

Harnessing the power of RADseq for ecological and evolutionary genomics

(2016) Kimberly R. Andrews et al.   NATURE REVIEWS GENETICS

Multiple glacial refugia lead to genetic structuring and the potential for reproductive isolation in a herbaceous plant

(2015) Karen B. Barnard-Kubow et al.   AMERICAN JOURNAL OF BOTANY

Population genetics of the naturally rare tree Dimorphandra wilsonii (Caesalpinioideae) of the Brazilian Cerrado

(2015) Christina C. Vinson et al.   Tree Genetics & Genomes

Relaxed random walk model coupled with ecological niche modeling unravel the dispersal dynamics of a Neotropical savanna tree species in the deeper Quaternary

(2015) Rosane G. Collevatti et al.   Frontiers in Plant Science

Neutral and Adaptive Drivers of Microgeographic Genetic Divergence within Continuous Populations: The Case of the Neotropical Tree Eperua falcata (Aubl.)

(2015) Louise Brousseau et al.   PLoS One

Genetic diversity, spatial genetic structure and realised seed and pollen dispersal of Himatanthus drasticus (Apocynaceae) in the Brazilian savanna

(2014) Cristina Baldauf et al.   CONSERVATION GENETICS

A field guide to whole-genome sequencing, assembly and annotation

(2014) Robert Ekblom et al.   Evolutionary Applications

Genetic effects of forest management practices: Global synthesis and perspectives

(2014) Wickneswari Ratnam et al.   FOREST ECOLOGY AND MANAGEMENT

Long-term impacts of selective logging on two Amazonian tree species with contrasting ecological and reproductive characteristics: inferences from Eco-gene model simulations

(2014) C C Vinson et al.   HEREDITY

Impacts of selective logging on inbreeding and gene flow in two Amazonian timber species with contrasting ecological and reproductive characteristics

(2014) C. C. Vinson et al.   MOLECULAR ECOLOGY

High levels of genetic diversity through pollen flow of the coniferous Araucaria angustifolia: a landscape level study in Southern Brazil

(2014) Luciano Medina-Macedo et al.   Tree Genetics & Genomes

The genetic diversity and introgression of Juglans regia and Juglans sigillata in Tibet as revealed by SSR markers

(2014) Hua Wang et al.   Tree Genetics & Genomes

Hyb-Seq: Combining Target Enrichment and Genome Skimming for Plant Phylogenomics

(2014) Kevin Weitemier et al.   Applications in Plant Sciences

A new eigenfunction spatial analysis describing population genetic structure

(2013) José Alexandre Felizola Diniz-Filho et al.   GENETICA

Demographic history and the low genetic diversity in Dipteryx alata (Fabaceae) from Brazilian Neotropical savannas

(2013) R G Collevatti et al.   HEREDITY

Remnant Pachira quinata pasture trees have greater opportunities to self and suffer reduced reproductive success due to inbreeding depression

(2013) P D Rymer et al.   HEREDITY

Phylogeography of Neotropical trees

(2013) Stephen Cavers et al.   JOURNAL OF BIOGEOGRAPHY

High-Resolution Global Maps of 21st-Century Forest Cover Change

(2013) M. C. Hansen et al.   SCIENCE

Amazon diversification and cross-Andean dispersal of the widespread Neotropical tree speciesJacaranda copaia(Bignoniaceae)

(2012) Caroline Scotti-Saintagne et al.   JOURNAL OF BIOGEOGRAPHY

Recent phylogeographic structure in a widespread ‘weedy’ Neotropical tree species,Cordia alliodora(Boraginaceae)

(2012) Paul D. Rymer et al.   JOURNAL OF BIOGEOGRAPHY

Phylogeography of a species complex of lowland Neotropical rain forest trees (Carapa, Meliaceae)

(2012) Caroline Scotti-Saintagne et al.   JOURNAL OF BIOGEOGRAPHY

Does long-distance pollen dispersal preclude inbreeding in tropical trees? Fragmentation genetics ofDysoxylum malabaricumin an agro-forest landscape

(2012) S. A. Ismail et al.   MOLECULAR ECOLOGY

Recent colonization of the Galápagos by the treeGeoffroea spinosaJacq. (Leguminosae)

(2012) S. CAETANO et al.   MOLECULAR ECOLOGY

Large-scale phylogeography of the disjunct Neotropical tree species Schizolobium parahyba (Fabaceae-Caesalpinioideae)

(2012) Andreia C. Turchetto-Zolet et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

A Unifying Model for the Analysis of Phenotypic, Genetic, and Geographic Data

(2012) Gilles Guillot et al.   SYSTEMATIC BIOLOGY

RADSeq: next-generation population genetics

(2011) J. W. Davey et al.   Briefings in Functional Genomics

Skyline-plot methods for estimating demographic history from nucleotide sequences

(2011) SIMON Y. W. HO et al.   Molecular Ecology Resources

Applications of next-generation sequencing to phylogeography and phylogenetics

(2011) John E. McCormack et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Genome-wide genetic marker discovery and genotyping using next-generation sequencing

(2011) John W. Davey et al.   NATURE REVIEWS GENETICS

Sistema reprodutivo do Ipê-Branco: Tabebuia roseo-alba (Ridley) Sandwith (Bignoniaceae)

(2010) Gabriel Gandolphi et al.   Acta Botanica Brasilica

Fragmented but not isolated: Contribution of single trees, small patches and long-distance pollen flow to genetic connectivity for Gomortega keule , an endangered Chilean tree

(2010) Tonya A. Lander et al.   BIOLOGICAL CONSERVATION

Broad-scale amplification of matK for DNA barcoding plants, a technical note

(2010) LUKE T. DUNNING et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Understanding the effects of isolation on seed and pollen flow, spatial genetic structure and effective population size of the dioecious tropical tree species Myracrodruon urundeuva

(2010) Ana P. S. C. Gaino et al.   CONSERVATION GENETICS

Microsatellite markers: an overview of the recent progress in plants

(2010) Rajwant K. Kalia et al.   EUPHYTICA

High levels of genetic differentiation and selfing in the Brazilian cerrado fruit tree Dipteryx alata Vog. (Fabaceae)

(2010) Roberto Tarazi et al.   GENETICS AND MOLECULAR BIOLOGY

Low levels of realized seed and pollen gene flow and strong spatial genetic structure in a small, isolated and fragmented population of the tropical tree Copaifera langsdorffii Desf

(2010) A M Sebbenn et al.   HEREDITY

NM+: software implementing parentage-based models for estimating gene dispersal and mating patterns in plants

(2010) IGOR J. CHYBICKI et al.   Molecular Ecology Resources

Population structure and genetic diversity in a commercial maize breeding program assessed with SSR and SNP markers

(2010) Delphine Van Inghelandt et al.   THEORETICAL AND APPLIED GENETICS

PopABC: a program to infer historical demographic parameters

(2009) Joao S. Lopes et al.   BIOINFORMATICS

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

SNP identification in crop plants

(2009) Martin W Ganal et al.   CURRENT OPINION IN PLANT BIOLOGY

Genetics of Zoarces populations

(2009) OVE FRYDENBERG et al.   HEREDITAS

ABC: A useful Bayesian tool for the analysis of population data

(2009) J.S. Lopes et al.   INFECTION GENETICS AND EVOLUTION

Phylogeography’s past, present, and future: 10 years after Avise, 2000

(2009) M.J. Hickerson et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Genetics in geographically structured populations: defining, estimating and interpreting FST

(2009) Kent E. Holsinger et al.   NATURE REVIEWS GENETICS

Inferring population history with DIY ABC: a user-friendly approach to approximate Bayesian computation

(2008) Jean-Marie Cornuet et al.   BIOINFORMATICS

Long-pollen Movement and Deviation of Random Mating in a Low-density Continuous Population of a Tropical Tree Hymenaea courbaril in the Brazilian Amazon

(2008) André Eduardo et al.   BIOTROPICA

Genetic effects of selective logging and pollen gene flow in a low-density population of the dioecious tropical tree Bagassa guianensis in the Brazilian Amazon

(2008) Marivana Borges Silva et al.   FOREST ECOLOGY AND MANAGEMENT

Simultaneous Estimation of Null Alleles and Inbreeding Coefficients

(2008) Igor J. Chybicki et al.   JOURNAL OF HEREDITY