An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12

ModFOLD6: an accurate web server for the global and local quality estimation of 3D protein models

(2017) Ali H. A. Maghrabi et al.   NUCLEIC ACIDS RESEARCH

Purely Structural Protein Scoring Functions Using Support Vector Machine and Ensemble Learning

(2016) Shokoufeh Mirzaei et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

conSSert: Consensus SVM Model for Accurate Prediction of Ordered Secondary Structure

(2016) Chris A. Kieslich et al.   Journal of Chemical Information and Modeling

Critical assessment of methods of protein structure prediction: Progress and new directions in round XI

(2016) John Moult et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Protein Structure and Function: Looking through the Network of Side-Chain Interactions

(2015) Moitrayee Bhattacharyya et al.   CURRENT PROTEIN & PEPTIDE SCIENCE

Effective protein model structure refinement by loop modeling and overall relaxation

(2015) Gyu Rie Lee et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Creating a gateway that enables large-scale science coopetition

(2014) Silvia Crivelli et al.   CONCURRENCY AND COMPUTATION-PRACTICE & EXPERIENCE

WeFold: A coopetition for protein structure prediction

(2014) George A. Khoury et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

GalaxyRefine: protein structure refinement driven by side-chain repacking

(2013) Lim Heo et al.   NUCLEIC ACIDS RESEARCH

Assessing the utility of coevolution-based residue-residue contact predictions in a sequence- and structure-rich era

(2013) H. Kamisetty et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

3Drefine: Consistent protein structure refinement by optimizing hydrogen bonding network and atomic-level energy minimization

(2013) Debswapna Bhattacharya et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Interplay of I-TASSER and QUARK for template-based and ab initio protein structure prediction in CASP10

(2013) Yang Zhang   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Princeton_TIGRESS: Protein geometry refinement using simulations and support vector machines

(2013) George A. Khoury et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

A global machine learning based scoring function for protein structure prediction

(2013) Eshel Faraggi et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Critical assessment of methods of protein structure prediction (CASP) - round x

(2013) John Moult et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Contact map prediction using a large-scale ensemble of rule sets and the fusion of multiple predicted structural features

(2012) J. Bacardit et al.   BIOINFORMATICS

APOLLO: a quality assessment service for single and multiple protein models

(2011) Z. Wang et al.   BIOINFORMATICS

GOAP: A Generalized Orientation-Dependent, All-Atom Statistical Potential for Protein Structure Prediction

(2011) Hongyi Zhou et al.   BIOPHYSICAL JOURNAL

Crystal structure of a monomeric retroviral protease solved by protein folding game players

(2011) Firas Khatib et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

A multilayer evaluation approach for protein structure prediction and model quality assessment

(2011) Jingfen Zhang et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

The ModFOLD server for the quality assessment of protein structural models

(2008) L. J. McGuffin   BIOINFORMATICS