Pan4Draft: A Computational Tool to Improve the Accuracy of Pan-Genomic Analysis Using Draft Genomes

panX: pan-genome analysis and exploration

(2017) Wei Ding et al.   NUCLEIC ACIDS RESEARCH

The Proteins API: accessing key integrated protein and genome information

(2017) Andrew Nightingale et al.   NUCLEIC ACIDS RESEARCH

PanWeb: A web interface for pan-genomic analysis

(2017) Yan Pantoja et al.   PLoS One

Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements

(2016) Supratim Mukherjee et al.   NUCLEIC ACIDS RESEARCH

Roary: rapid large-scale prokaryote pan genome analysis

(2015) Andrew J. Page et al.   BIOINFORMATICS

Inside the Pan-genome - Methods and Software Overview

(2015) Luis Carlos Guimaraes et al.   CURRENT GENOMICS

Homology-Independent Metrics for Comparative Genomics

(2015) Tarcisio José Domingos Coutinho et al.   Computational and Structural Biotechnology Journal

Quality scores for 32,000 genomes

(2015) Miriam L Land et al.   Standards in Genomic Sciences

Next generation sequencing technology: Advances and applications

(2014) H.P.J. Buermans et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Gegenees: Fragmented Alignment of Multiple Genomes for Determining Phylogenomic Distances and Genetic Signatures Unique for Specified Target Groups

(2012) Joakim Ågren et al.   PLoS One

PGAP: pan-genomes analysis pipeline

(2011) Yongbing Zhao et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS