Isothermal folding of a light-up bio-orthogonal RNA origami nanoribbon

Development of a genetically encodable FRET system using fluorescent RNA aptamers

(2018) Mette D. E. Jepsen et al.   Nature Communications

Self-assembly of multi-stranded RNA motifs into lattices and tubular structures

(2017) Jaimie Marie Stewart et al.   NUCLEIC ACIDS RESEARCH

Computational design of small transcription activating RNAs for versatile and dynamic gene regulation

(2017) James Chappell et al.   Nature Communications

Designing Uniquely Addressable Bio-orthogonal Synthetic Scaffolds for DNA and RNA Origami

(2017) Jerzy Kozyra et al.   ACS Synthetic Biology

A Fluorescent Split Aptamer for Visualizing RNA–RNA Assembly In Vivo

(2017) Khalid K. Alam et al.   ACS Synthetic Biology

Electrotransfection of Polyamine Folded DNA Origami Structures

(2016) Aradhana Chopra et al.   NANO LETTERS

Programmable RNA microstructures for coordinated delivery of siRNAs

(2016) Jaimie Marie Stewart et al.   Nanoscale

High resolution atomic force microscopy of double-stranded RNA

(2016) Pablo Ares et al.   Nanoscale

Engineering a ribozyme cleavage-induced split fluorescent aptamer complementation assay

(2016) Simon Ausländer et al.   NUCLEIC ACIDS RESEARCH

Next-generation RNA-based fluorescent biosensors enable anaerobic detection of cyclic di-GMP

(2016) Xin C. Wang et al.   NUCLEIC ACIDS RESEARCH

Nucleic Acid Engineering: RNA Following the Trail of DNA

(2016) Hyejin Kim et al.   ACS Combinatorial Science

Structural elucidation of a novel mechanism for the bacteriophage-based inhibition of the RNA degradosome

(2016) An Van den Bossche et al.   eLife

Sub-nanometer Resolution Imaging with Amplitude-modulation Atomic Force Microscopy in Liquid

(2016) Ethan J. Miller et al.   Jove-Journal of Visualized Experiments

Plasmon resonance tuning using DNA origami actuation

(2015) Luca Piantanida et al.   CHEMICAL COMMUNICATIONS

In-Gel Imaging of RNA Processing Using Broccoli Reveals Optimal Aptamer Expression Strategies

(2015) Grigory S. Filonov et al.   CHEMISTRY & BIOLOGY

Rapid Degradation of Host mRNAs by Stimulation of RNase E Activity by Srd of Bacteriophage T4

(2015) D. Qi et al.   GENETICS

Genome-wide study of mRNA degradation and transcript elongation in Escherichia coli

(2015) H. Chen et al.   Molecular Systems Biology

RNA as a stable polymer to build controllable and defined nanostructures for material and biomedical applications

(2015) Hui Li et al.   Nano Today

Imaging metabolite dynamics in living cells using a Spinach-based riboswitch

(2015) Mingxu You et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Internalization and Observation of Fluorescent Biomolecules in Living Microorganisms via Electroporation

(2015) Louise Aigrain et al.   Jove-Journal of Visualized Experiments

In Silico Design and Enzymatic Synthesis of Functional RNA Nanoparticles

(2014) Kirill A. Afonin et al.   ACCOUNTS OF CHEMICAL RESEARCH

Triggering of RNA Interference with RNA–RNA, RNA–DNA, and DNA–RNA Nanoparticles

(2014) Kirill A. Afonin et al.   ACS Nano

Labeling native bacterial RNA in live cells

(2014) Paul Toran et al.   CELL RESEARCH

Preparation of Chemically Modified RNA Origami Nanostructures

(2014) Masayuki Endo et al.   CHEMISTRY-A EUROPEAN JOURNAL

A nucleotide-level coarse-grained model of RNA

(2014) Petr Šulc et al.   JOURNAL OF CHEMICAL PHYSICS

Broccoli: Rapid Selection of an RNA Mimic of Green Fluorescent Protein by Fluorescence-Based Selection and Directed Evolution

(2014) Grigory S. Filonov et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

A G-quadruplex–containing RNA activates fluorescence in a GFP-like fluorophore

(2014) Hao Huang et al.   Nature Chemical Biology

DNA origami–based standards for quantitative fluorescence microscopy

(2014) Jürgen J Schmied et al.   Nature Protocols

Structural basis for activity of highly efficient RNA mimics of green fluorescent protein

(2014) Katherine Deigan Warner et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

A single-stranded architecture for cotranscriptional folding of RNA nanostructures

(2014) C. Geary et al.   SCIENCE

A DNA Origami Nanorobot Controlled by Nucleic Acid Hybridization

(2014) Emanuela Torelli et al.   Small

RNA Signal Amplifier Circuit with Integrated Fluorescence Output

(2014) Farhima Akter et al.   ACS Synthetic Biology

Fluorescent Monitoring of RNA Assembly and Processing Using the Split-Spinach Aptamer

(2014) Tucker A. Rogers et al.   ACS Synthetic Biology

Long-Lived Intracellular Single-Molecule Fluorescence Using Electroporated Molecules

(2013) Robert Crawford et al.   BIOPHYSICAL JOURNAL

RNA-templated DNA origami structures

(2013) Masayuki Endo et al.   CHEMICAL COMMUNICATIONS

RNA–DNA hybrid origami: folding of a long RNA single strand into complex nanostructures using short DNA helper strands

(2013) Pengfei Wang et al.   CHEMICAL COMMUNICATIONS

Universal Aptamer-Based Real-Time Monitoring of Enzymatic RNA Synthesis

(2013) Katharina Höfer et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

RNA-Based Fluorescent Biosensors for Live Cell Imaging of Second Messengers Cyclic di-GMP and Cyclic AMP-GMP

(2013) Colleen A. Kellenberger et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

A superfolding Spinach2 reveals the dynamic nature of trinucleotide repeat–containing RNA

(2013) Rita L Strack et al.   NATURE METHODS

Using Spinach-based sensors for fluorescence imaging of intracellular metabolites and proteins in living bacteria

(2013) Rita L Strack et al.   Nature Protocols

A New Protein-Protein Interaction Sensor Based on Tripartite Split-GFP Association

(2013) Stéphanie Cabantous et al.   Scientific Reports

The Spinach RNA Aptamer as a Characterization Tool for Synthetic Biology

(2013) Georgios Pothoulakis et al.   ACS Synthetic Biology

Complex shapes self-assembled from single-stranded DNA tiles

(2012) Bryan Wei et al.   NATURE

Fluorescence Imaging of Cellular Metabolites with RNA

(2012) Jeremy S. Paige et al.   SCIENCE

Rapid Folding of DNA into Nanoscale Shapes at Constant Temperature

(2012) J.-P. J. Sobczak et al.   SCIENCE

A Logic-Gated Nanorobot for Targeted Transport of Molecular Payloads

(2012) S. M. Douglas et al.   SCIENCE

Assembly of multifunctional phi29 pRNA nanoparticles for specific delivery of siRNA and other therapeutics to targeted cells

(2011) Yi Shu et al.   METHODS

Organization of Intracellular Reactions with Rationally Designed RNA Assemblies

(2011) C. J. Delebecque et al.   SCIENCE

RNA Mimics of Green Fluorescent Protein

(2011) J. S. Paige et al.   SCIENCE

A polyhedron made of tRNAs

(2010) Isil Severcan et al.   Nature Chemistry

In vitro assembly of cubic RNA-based scaffolds designed in silico

(2010) Kirill A. Afonin et al.   Nature Nanotechnology

The emerging field of RNA nanotechnology

(2010) Peixuan Guo   Nature Nanotechnology

Self-assembly of DNA into nanoscale three-dimensional shapes

(2009) Shawn M. Douglas et al.   NATURE

Self-assembly of a nanoscale DNA box with a controllable lid

(2009) Ebbe S. Andersen et al.   NATURE

Rapid prototyping of 3D DNA-origami shapes with caDNAno

(2009) Shawn M. Douglas et al.   NUCLEIC ACIDS RESEARCH

Bacteriophage T7 protein kinase phosphorylates RNase E and stabilizes mRNAs synthesized by T7 RNA polymerase

(2003) Isabelle Marchand et al.   MOLECULAR MICROBIOLOGY