Use of whole genome sequencing to investigate an increase in Neisseria gonorrhoeae infection among women in urban areas of Australia

The Molecular Epidemiology and Antimicrobial Resistance of Neisseria gonorrhoeae in Australia: A Nationwide Cross-Sectional Study, 2012

(2016) Ella Trembizki et al.   CLINICAL INFECTIOUS DISEASES

WGS analysis and molecular resistance mechanisms of azithromycin-resistant (MIC >2 mg/L)Neisseria gonorrhoeaeisolates in Europe from 2009 to 2014

(2016) Susanne Jacobsson et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Changes in the rates ofNeisseria gonorrhoeaeantimicrobial resistance are primarily driven by dynamic fluctuations in common gonococcal genotypes

(2016) Monica M. Lahra et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

The novel 2016 WHONeisseria gonorrhoeaereference strains for global quality assurance of laboratory investigations: phenotypic, genetic and reference genome characterization

(2016) Magnus Unemo et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Genomic Epidemiology and Molecular Resistance Mechanisms of Azithromycin-Resistant Neisseria gonorrhoeae in Canada from 1997 to 2014

(2016) Walter Demczuk et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Whole-genome sequencing to determine transmission of Neisseria gonorrhoeae : an observational study

(2016) Dilrini De Silva et al.   LANCET INFECTIOUS DISEASES

Evolview v2: an online visualization and management tool for customized and annotated phylogenetic trees

(2016) Zilong He et al.   NUCLEIC ACIDS RESEARCH

Self-reported testing and treatment histories among older Australian men and women who may be at risk of a sexually transmissible infection

(2016) Wendy Heywood et al.   Sexual Health

Genomic Analysis and Comparison of Two Gonorrhea Outbreaks

(2016) Xavier Didelot et al.   mBio

MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

(2015) Dinghua Li et al.   BIOINFORMATICS

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Antimicrobial Resistance in Neisseria gonorrhoeae in the 21st Century: Past, Evolution, and Future

(2014) M. Unemo et al.   CLINICAL MICROBIOLOGY REVIEWS

Whole-Genome Phylogenomic Heterogeneity of Neisseria gonorrhoeae Isolates with Decreased Cephalosporin Susceptibility Collected in Canada between 1989 and 2013

(2014) Walter Demczuk et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Genomic epidemiology of Neisseria gonorrhoeae with reduced susceptibility to cefixime in the USA: a retrospective observational study

(2014) Yonatan H Grad et al.   LANCET INFECTIOUS DISEASES

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

(2014) Nicholas J. Croucher et al.   NUCLEIC ACIDS RESEARCH

Epidemiology of gonorrhoea notifications in Australia, 2007–12

(2014) April Roberts-Witteveen et al.   Sexual Health

The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes

(2014) Todd J Treangen et al.   GENOME BIOLOGY

Antimicrobial Resistance and Molecular Typing of Neisseria gonorrhoeae Isolates in Kyoto and Osaka, Japan, 2010 to 2012: Intensified Surveillance after Identification of the First Strain (H041) with High-Level Ceftriaxone Resistance

(2013) Ken Shimuta et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

BIGSdb: Scalable analysis of bacterial genome variation at the population level

(2011) Keith A Jolley et al.   BMC BIOINFORMATICS

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

Neisseria gonorrhoeae infection in urban Sydney women: prevalence and predictors

(2011) Paula McDonagh et al.   Sexual Health

Sexually transmissible infections among sex workers and their clients: variation in prevalence between sectors of the industry

(2009) Charrlotte Seib et al.   Sexual Health