The epigenetic landscape of transgenerational acclimation to ocean warming

RNA Splicing

(2016) Maarten M.G. van den Hoogenhof et al.   CIRCULATION RESEARCH

Transgenerational plasticity of reproduction depends on rate of warming across generations

(2016) Jennifer M. Donelson et al.   Evolutionary Applications

DNA methylation in imprinted genesIGF2andGNASXLis associated with prenatal maternal stress

(2015) E. B. Vangeel et al.   GENES BRAIN AND BEHAVIOR

Mechanisms and costs of mitochondrial thermal acclimation in a eurythermal killifish (Fundulus heteroclitus)

(2015) D. J. Chung et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

The EMBL-EBI bioinformatics web and programmatic tools framework

(2015) Weizhong Li et al.   NUCLEIC ACIDS RESEARCH

Molecular processes of transgenerational acclimation to a warming ocean

(2015) Heather D. Veilleux et al.   Nature Climate Change

Multidimensional Scaling Using Majorization: SMACOF inR

(2015) Jan de Leeuw et al.   Journal of Statistical Software

Predicting evolutionary responses to climate change in the sea

(2013) Philip L. Munday et al.   ECOLOGY LETTERS

Identification of DEAD-box RNA Helicase 6 (DDX6) as a Cellular Modulator of Vascular Endothelial Growth Factor Expression under Hypoxia

(2013) Sebastian de Vries et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Rcf1 Mediates Cytochrome Oxidase Assembly and Respirasome Formation, Revealing Heterogeneity of the Enzyme Complex

(2012) Milena Vukotic et al.   Cell Metabolism

Transgenerational Glucose Intolerance WithIgf2/H19Epigenetic Alterations in Mouse Islet Induced by Intrauterine Hyperglycemia

(2012) Guo-Lian Ding et al.   DIABETES

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Understanding transgenerational epigenetic inheritance via the gametes in mammals

(2012) Lucia Daxinger et al.   NATURE REVIEWS GENETICS

methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles

(2012) Altuna Akalin et al.   GENOME BIOLOGY

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications

(2011) Felix Krueger et al.   BIOINFORMATICS

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

(2011) Carson Holt et al.   BMC BIOINFORMATICS

Thermal legacies: transgenerational effects of temperature on growth in a vertebrate

(2011) Santiago Salinas et al.   ECOLOGY LETTERS

The implications of nongenetic inheritance for evolution in changing environments

(2011) Russell Bonduriansky et al.   Evolutionary Applications

Rapid transgenerational acclimation of a tropical reef fish to climate change

(2011) J. M. Donelson et al.   Nature Climate Change

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

Estrogen-related Receptor γ Is a Key Regulator of Muscle Mitochondrial Activity and Oxidative Capacity

(2010) Shamina M. Rangwala et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Chronic high-fat diet in fathers programs β-cell dysfunction in female rat offspring

(2010) Sheau-Fang Ng et al.   NATURE

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

De novo assembly and analysis of RNA-seq data

(2010) Gordon Robertson et al.   NATURE METHODS

Glutaminase 2, a novel p53 target gene regulating energy metabolism and antioxidant function

(2010) W. Hu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PC-TP/StARD2: Of membranes and metabolism

(2010) Hye Won Kang et al.   TRENDS IN ENDOCRINOLOGY AND METABOLISM

Adaptation, Plasticity, and Extinction in a Changing Environment: Towards a Predictive Theory

(2010) Luis-Miguel Chevin et al.   PLOS BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Regulation of Angiogenesis by Oxygen and Metabolism

(2009) Peter Fraisl et al.   DEVELOPMENTAL CELL

ABySS: A parallel assembler for short read sequence data

(2009) J. T. Simpson et al.   GENOME RESEARCH

Transgenerational Epigenetic Inheritance: Prevalence, Mechanisms, and Implications for the Study of Heredity and Evolution

(2009) Eva Jablonka et al.   QUARTERLY REVIEW OF BIOLOGY

IGF2: Epigenetic regulation and role in development and disease

(2008) Wendy Chao et al.   CYTOKINE & GROWTH FACTOR REVIEWS

Cidea is associated with lipid droplets and insulin sensitivity in humans

(2008) V. Puri et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ECOLOGY: Physiology and Climate Change

(2008) H. O. Portner et al.   SCIENCE