Range Expansion and the Origin of USA300 North American Epidemic Methicillin-Resistant Staphylococcus aureus

Life After USA300: The Rise and Fall of a Superbug

(2017) Paul J. Planet   JOURNAL OF INFECTIOUS DISEASES

Demography and Intercontinental Spread of the USA300 Community-Acquired Methicillin-Resistant Staphylococcus aureus Lineage

(2016) Philippe Glaser et al.   mBio

Identifying the effect of patient sharing on between-hospital genetic differentiation of methicillin-resistant Staphylococcus aureus

(2016) Hsiao-Han Chang et al.   Genome Medicine

Endosymbiont evolution: predictions from theory and surprises from genomes

(2015) Jennifer J. Wernegreen   Annals of the New York Academy of Sciences

Ecological Overlap and Horizontal Gene Transfer in Staphylococcus aureus and Staphylococcus epidermidis

(2015) Guillaume Méric et al.   Genome Biology and Evolution

Comparative Genomics of Community-Associated Methicillin-ResistantStaphylococcus aureusShows the Emergence of Clone ST8-USA300 in Geneva, Switzerland

(2015) Elodie Von Dach et al.   JOURNAL OF INFECTIOUS DISEASES

Parallel Epidemics of Community-Associated Methicillin-ResistantStaphylococcus aureusUSA300 Infection in North and South America

(2015) Paul J. Planet et al.   JOURNAL OF INFECTIOUS DISEASES

Transmission and Microevolution of USA300 MRSA in U.S. Households: Evidence from Whole-Genome Sequencing

(2015) Md Tauqeer Alam et al.   mBio

ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes

(2015) Xavier Didelot et al.   PLoS Computational Biology

Continued Emergence of USA300 Methicillin-Resistant Staphylococcus aureus in the United States: Results from a Nationwide Surveillance Study

(2014) Daniel J. Diekema et al.   INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY

Molecular tracing of the emergence, diversification, and transmission of S. aureus sequence type 8 in a New York community

(2014) A.-C. Uhlemann et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial Phylogenetic Reconstruction from Whole Genomes Is Robust to Recombination but Demographic Inference Is Not

(2014) Jessica Hedge et al.   mBio

DETECTING RANGE EXPANSIONS FROM GENETIC DATA

(2013) Benjamin M. Peter et al.   EVOLUTION

Estimating and interpreting FST: The impact of rare variants

(2013) G. Bhatia et al.   GENOME RESEARCH

The Hidden Geometry of Complex, Network-Driven Contagion Phenomena

(2013) D. Brockmann et al.   SCIENCE

Molecular Epidemiology of Community-Associated Methicillin-resistant Staphylococcus aureus in the genomic era: a Cross-Sectional Study

(2013) Mattia Prosperi et al.   Scientific Reports

USA300 abroad: global spread of a virulent strain of community-associated methicillin-resistant Staphylococcus aureus

(2012) G.R. Nimmo   CLINICAL MICROBIOLOGY AND INFECTION

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Characterization of Nasal and Blood Culture Isolates of Methicillin-Resistant Staphylococcus aureus from Patients in United States Hospitals

(2011) Fred C. Tenover et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Comparison of Staphylococcus aureus From Skin and Soft-Tissue Infections in US Emergency Department Patients, 2004 and 2008

(2011) D. A. Talan et al.   CLINICAL INFECTIOUS DISEASES

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Detection of recombination events in bacterial genomes from large population samples

(2011) Pekka Marttinen et al.   NUCLEIC ACIDS RESEARCH

pegas: an R package for population genetics with an integrated-modular approach

(2010) E. Paradis   BIOINFORMATICS

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

Community-Associated Methicillin-Resistant Staphylococcus aureus: Epidemiology and Clinical Consequences of an Emerging Epidemic

(2010) M. Z. David et al.   CLINICAL MICROBIOLOGY REVIEWS

Plasmodium falciparum Accompanied the Human Expansion out of Africa

(2010) Kazuyuki Tanabe et al.   CURRENT BIOLOGY

Genetic Consequences of Range Expansions

(2009) Laurent Excoffier et al.   Annual Review of Ecology Evolution and Systematics

Methicillin-resistant Staphylococcus aureus strain USA300: origin and epidemiology

(2009) F. C. Tenover et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Explaining worldwide patterns of human genetic variation using a coalescent-based serial founder model of migration outward from Africa

(2009) M. DeGiorgio et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MRSA USA300 Clone and VREF — A U.S.–Colombian Connection?

(2008) Cesar A. Arias et al.   NEW ENGLAND JOURNAL OF MEDICINE

Worldwide Human Relationships Inferred from Genome-Wide Patterns of Variation

(2008) J. Z. Li et al.   SCIENCE