Viral Entry Properties Required for Fitness in Humans Are Lost through Rapid Genomic Change during Viral Isolation

A decade of RNA virus metagenomics is (not) enough

(2018) Alexander L. Greninger   VIRUS RESEARCH

Cooperating H3N2 Influenza Virus Variants Are Not Detectable in Primary Clinical Samples

(2018) Katherine S. Xue et al.   mSphere

Prolonged Shedding of Human Coronavirus in Hematopoietic Cell Transplant Recipients: Risk Factors and Viral Genome Evolution

(2017) Chikara Ogimi et al.   JOURNAL OF INFECTIOUS DISEASES

Global epidemiology of non-influenza RNA respiratory viruses: data gaps and a growing need for surveillance

(2017) Julian W Tang et al.   LANCET INFECTIOUS DISEASES

GenBank

(2017) Dennis A Benson et al.   NUCLEIC ACIDS RESEARCH

A structural explanation for the low effectiveness of the seasonal influenza H3N2 vaccine

(2017) Nicholas C. Wu et al.   PLoS Pathogens

Myeloablation-associated deletion of ORF4 in a human coronavirus 229E infection

(2017) Alexander L. Greninger et al.   npj Genomic Medicine

Rule-Out Outbreak: 24-Hour Metagenomic Next-Generation Sequencing for Characterizing Respiratory Virus Source for Infection Prevention

(2017) Alexander L. Greninger et al.   Journal of the Pediatric Infectious Diseases Society

Rapid Metagenomic Next-Generation Sequencing during an Investigation of Hospital-Acquired Human Parainfluenza Virus 3 Infections

(2016) Alexander L. Greninger et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Copy Number Heterogeneity of JC Virus Standards

(2016) Alexander L. Greninger et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Effects of egg-adaptation on receptor-binding and antigenic properties of recent influenza A (H3N2) vaccine viruses

(2016) Lauren Parker et al.   JOURNAL OF GENERAL VIROLOGY

Measurements of Intrahost Viral Diversity Are Extremely Sensitive to Systematic Errors in Variant Calling

(2016) John T. McCrone et al.   JOURNAL OF VIROLOGY

Features of Circulating Parainfluenza Virus Required for Growth in Human Airway

(2016) Laura M. Palermo et al.   mBio

Clinical Sequencing Uncovers Origins and Evolution of Lassa Virus

(2015) Kristian G. Andersen et al.   CELL

Clinical metagenomic identification of Balamuthia mandrillaris encephalitis and assembly of the draft genome: the continuing case for reference genome sequencing

(2015) Alexander L. Greninger et al.   Genome Medicine

Rapid metagenomic identification of viral pathogens in clinical samples by real-time nanopore sequencing analysis

(2015) Alexander L. Greninger et al.   Genome Medicine

Molecular evolution of the haemagglutinin-neuraminidase gene in human parainfluenza virus type 3 isolates from children with acute respiratory illness in Yamagata prefecture, Japan

(2014) K. Mizuta et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Circulating Clinical Strains of Human Parainfluenza Virus Reveal Viral Entry Requirements for In Vivo Infection

(2014) S. G. Palmer et al.   JOURNAL OF VIROLOGY

Epidemiology and clinical presentation of the four human parainfluenza virus types

(2013) Wen-Kuan Liu et al.   BMC INFECTIOUS DISEASES

Multiplex real-time PCR for prompt diagnosis of an outbreak of human parainfluenza 3 virus in children with acute leukemia

(2013) R. Berrueco et al.   INFECTION

Interaction between the Hemagglutinin-Neuraminidase and Fusion Glycoproteins of Human Parainfluenza Virus Type III Regulates Viral Growth In Vivo

(2013) R. Xu et al.   mBio

Antigenic Drift of the Pandemic 2009 A(H1N1) Influenza Virus in a Ferret Model

(2013) Teagan Guarnaccia et al.   PLoS Pathogens

Regulation of Paramyxovirus Fusion Activation: the Hemagglutinin-Neuraminidase Protein Stabilizes the Fusion Protein in a Pretriggered State

(2012) M. Porotto et al.   JOURNAL OF VIROLOGY

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Adaptation of Human Parainfluenza Virus to Airway Epithelium Reveals Fusion Properties Required for Growth in Host Tissue

(2012) S. G. Palmer et al.   mBio

Mechanism of Fusion Triggering by Human Parainfluenza Virus Type III

(2011) Matteo Porotto et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Fixation of Oligosaccharides to a Surface May Increase the Susceptibility to Human Parainfluenza Virus 1, 2, or 3 Hemagglutinin-Neuraminidase

(2011) M. M. Tappert et al.   JOURNAL OF VIROLOGY

Homologous Recombination in Negative Sense RNA Viruses

(2011) Guan-Zhu Han et al.   Viruses-Basel

Sequential mutations associated with adaptation of human cytomegalovirus to growth in cell culture

(2010) D. J. Dargan et al.   JOURNAL OF GENERAL VIROLOGY

Global burden of acute lower respiratory infections due to respiratory syncytial virus in young children: a systematic review and meta-analysis

(2010) Harish Nair et al.   LANCET

A Metagenomic Analysis of Pandemic Influenza A (2009 H1N1) Infection in Patients from North America

(2010) Alexander L. Greninger et al.   PLoS One

A recombinant, infectious human parainfluenza virus type 3 expressing the enhanced green fluorescent protein for use in high-throughput antiviral assays

(2009) Jason P. Roth et al.   ANTIVIRAL RESEARCH

Control of an Outbreak of Human Parainfluenza Virus 3 in Hematopoietic Stem Cell Transplant Recipients

(2009) Richard T. Maziarz et al.   BIOLOGY OF BLOOD AND MARROW TRANSPLANTATION

Human Parainfluenza Virus Infection of the Airway Epithelium: Viral Hemagglutinin-Neuraminidase Regulates Fusion Protein Activation and Modulates Infectivity

(2009) L. M. Palermo et al.   JOURNAL OF VIROLOGY

The Evolutionary and Epidemiological Dynamics of the Paramyxoviridae

(2008) Laura W. Pomeroy et al.   JOURNAL OF MOLECULAR EVOLUTION

Engineered Intermonomeric Disulfide Bonds in the Globular Domain of Newcastle Disease Virus Hemagglutinin-Neuraminidase Protein: Implications for the Mechanism of Fusion Promotion

(2008) P. J. Mahon et al.   JOURNAL OF VIROLOGY