Article
Biochemistry & Molecular Biology
Igor Ryzhov, Alexey Eroshin, Yuriy A. Zhabanov, Daniil N. Finogenov, Pavel A. Stuzhin
Summary: This study investigates the effect of chlorination on the electronic and geometric structures, as well as properties such as chemical bonds and infrared spectra, of metal-free, Al, Ga and In complexes with tetrapyrazinoporphyrazine (TPyzPA) and octachlorotetrapyrazinoporphyrazine (TPyzPACl(8)). Density functional theory (DFT) calculations, NBO-analysis, time-dependent density functional theory (TDDFT) simulations, and analysis of potential energy distribution were carried out to provide insights into these macrocycles.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2022)
Article
Chemistry, Physical
Ceyhun Kucuk, Senay Yurdakul, Belgin Erdem
Summary: The study investigated the properties of 5-iodoindole using theoretical calculations and experimental methods, as well as explored its antimicrobial activity against certain bacteria.
JOURNAL OF MOLECULAR STRUCTURE
(2022)
Article
Thermodynamics
Qingru Shen, Zewu Fu, Rui Li, Yulong Wu
Summary: In this study, a lignin β-O-4 type dimer model compound was chosen and analyzed using density functional theory (DFT) method combined with Py-GC/MS to investigate its pyrolysis behavior. 9 reasonable reaction paths were studied by DFT, revealing that the main products of the lignin dimer model compound pyrolysis are 2-methoxy-4-vinylphenol and 2-methoxyphenol.
JOURNAL OF THERMAL ANALYSIS AND CALORIMETRY
(2021)
Article
Chemistry, Physical
Ramanna P. Kavali, Jayashree Tonannavar, Jyoti Bhovi, J. Tonannavar
Summary: The molecular structure and vibrational spectra of 2,5-Dihydroxyterephthalic acid were studied through molecular dynamics simulation and experimental observation. The characteristics of intra- and inter-molecular O-H···O bonds were analyzed using stabilization energy and molecular orbital properties. Quantitative and graphical visualization results of non-covalent interactions were obtained through charge region analysis.
JOURNAL OF MOLECULAR STRUCTURE
(2022)
Article
Chemistry, Inorganic & Nuclear
Sibel Celik, Senay Yurdakul, Belgin Erdem
Summary: The synthesized silver(I) complex showed promising antimicrobial activity against various bacterial species, as evidenced by both experimental data and computational results, indicating its potential as an effective antibacterial agent.
INORGANIC CHEMISTRY COMMUNICATIONS
(2021)
Article
Chemistry, Physical
Hatice Ari, Dilek Pandir, Mustafa Boyukata
Summary: Quantum chemical calculations and spectroscopic analyses were used to characterize the structural and vibrational properties of STZ, with results showing good agreement with experimental data.
JOURNAL OF MOLECULAR STRUCTURE
(2021)
Article
Chemistry, Physical
Dona Benny, Johanan Christian Prasana, Jamal M. Khaled, Ghulam Abbas, S. Muthu
Summary: This research involves experimental, computational, and biological evaluations of a tetrazole derivative. The compound shows potential as an anticonvulsant without causing toxicity.
JOURNAL OF MOLECULAR LIQUIDS
(2023)
Article
Biochemistry & Molecular Biology
Yuriy A. Zhabanov, Alexey Eroshin, Igor Ryzhov, Ilya A. Kuzmin, Daniil N. Finogenov, Pavel A. Stuzhin
Summary: The Knudsen effusion method with mass spectrometric control was used to study the sublimation enthalpy of metal-free tetrakis(1,2,5-thiadiazolo)porphyrazine and its nickel complex, as well as to determine the geometrical and electronic structure through DFT calculations. The electronic structure of NiTTDPz was further analyzed using the CASSCF method and MCQDPT2. Experimental and theoretical studies were conducted on electronic absorption and vibrational spectra for H(2)TTDPz and NiTTDPz.
Article
Agricultural Engineering
Shuang Wang, Shuang Zhao, Xiaoxue Cheng, Lili Qian, Bahram Barati, Xun Gong, Bin Cao, Chuan Yuan
Summary: This study examined the conversion of Enteromorpha clathrata into bio-oil through hydrothermal liquefaction, finding that a two-step reaction method can increase bio-oil yield and improve quality.
BIORESOURCE TECHNOLOGY
(2021)
Article
Chemistry, Physical
Sibel Celik, Abdullah Atilgan, Meryem Alp, Senay Yurdakul, Zeynep Demircioglu, Namik Ozdemir, Orhan Buyukgungor
Summary: In this work, a new silver (I) complex, [Ag(3-pye)2(H2O)](NO3), has been synthesized and characterized. X-ray diffraction analysis revealed its crystallization in the monoclinic system with the C2/c space group. Computational studies using DFT approach support the experimental results and provide insights into the structural parameters, spectral characteristics, and electronic properties. Hirshfeld surface analysis was also used to identify non-covalent interactions within the crystal structure and visualize its conformity.
JOURNAL OF MOLECULAR STRUCTURE
(2023)
Article
Physics, Applied
Geoffrey Tse
Summary: In this study, we used ab initio density functional theory (DFT) calculations with a hybrid Heyd-Scuseria-Ernzerhof 2003 (HSE03) functional and semi-local general gradient approximation (GGA) scheme to explore the structural, electronic, optical, mechanical, and vibrational properties of hexagonal Di-Tellurium-Tungsten (Te2W). The band structure and electron orbitals from the partial density of states (PDOS) were analyzed to understand the structural and electronic properties. Additionally, our reflectivity data from optical spectra explained the potential applications of Te2W in mechanical engineering, such as lubricant oils, and the refractive index results suggested its suitability for optical displays. Finally, we demonstrated the physical and mechanical stability of Te2W through DFT-calculated elastic coefficients, mechanical moduli, and phonon data, highlighting the superiority of our non-local hybrid functional over traditional semi-local exchange-correlation functional in accurately predicting the band structure and bandgap energy E-g.
MODERN PHYSICS LETTERS B
(2023)
Article
Physics, Applied
Geoffrey Tse
Summary: Using ab initio first-principles calculations, this study investigates the properties of Ag3S and Ag3Se with nonlocal hybrids exchange-correlation functional. The material is classified as Fermi-Dirac semi-metal. When replacing S with Se, the electronic band shifts downward. The optical results, such as absorption coefficients and dielectric functions, are similar for both compounds.
MODERN PHYSICS LETTERS B
(2023)
Article
Environmental Sciences
Joanna Nackiewicz, Lukasz Kolodziej, Anna Poliwoda, Malgorzata A. Broda
Summary: This research investigates the influence of catalytic activity of iron(II) octacarboxyphthalocyanines (FePcOC) on the transformation of diclofenac (DCF), a popular anti-inflammatory analgesic, showing that diclofenac undergoes a transformation in the presence of monomeric form of iron octacarboxyphthalocyanine and hydroxyl radicals, causing distinct changes in the UV-Vis absorption spectrum. The study also confirmed the experimental data using TD-DFT calculations.
Article
Biochemical Research Methods
Muhammad Tariq, Safeer Jan, Sehrish Sarfaraz, Shabbir Muhammad, Khurshid Ayub
Summary: In this study, the hydrogen bonding phenomenon in alcohols-dinitrobenzene (DNB) systems was investigated using electrochemical and computational approaches. It was found that the hydrogen bonding interactions can be observed through cyclic voltammetry when alcohols are added. The strength of hydrogen bonding was evaluated qualitatively and quantitatively using theoretical calculations, which is important for understanding interactions in biological systems.
JOURNAL OF MOLECULAR GRAPHICS & MODELLING
(2023)
Article
Chemistry, Analytical
J. A. Antunes, L. E. da Silva, J. L. B. de Faria, T. A. de Toledo, A. M. R. Teixeira, R. J. Ramos, P. T. C. Freire, R. R. F. Bento
Summary: The vibrational, optical, electrochemical and thermal properties of the Meldrum acid derivative HYM were investigated using a combination of experimental techniques and theoretical calculations. The study successfully predicted the most stable conformer of the molecule and provided accurate interpretation of its vibrational spectra based on experimental and theoretical results.
VIBRATIONAL SPECTROSCOPY
(2021)
Article
Chemistry, Physical
S. Niranjani, C. B. Nirmala, P. Rajkumar, Goncagul Serdaroglu, N. Jayaprakash, K. Venkatachalam
Summary: This study explores the extremely coloured charge-transfer complexes (CTCs) formed between the antihyperlipidemic drug atorvastatin calcium (ATC) and electron acceptors such as iodine, chloranil, and DDQ. Various analysis techniques were used to understand the chemical mechanism of the synthesized ATC-CTCs, and their biological activities were tested against bacterial strains. Computational analysis was performed to predict the reactivity tendency and suitable attack site, as well as the non-covalent interactions that contribute to compound stabilization.
JOURNAL OF MOLECULAR LIQUIDS
(2022)
Article
Chemistry, Physical
Nesimi Uludag, Goncagul Serdaroglu, Paramasivam Sugumar, Parthasarathi Rajkumar, Naki Colak, Erol Ercag
Summary: Efficient pathway synthesis of 6-methyl-4,5,6,7-tetrahydrobenzo[b]thiophene-3-carboxylate derivatives was achieved. The structures of the synthesized compounds were confirmed using spectroscopic methods. Antioxidant assays revealed that compound 2 exhibited the highest antioxidant capacity, followed by compound 1 and compound 3. Docking studies demonstrated that compound 1 had the strongest inhibitory activity against Escherichia coli thymidylate synthase. TD-DFT calculations and NBO analysis further supported the conclusions drawn from the antioxidant assays and docking studies.
JOURNAL OF MOLECULAR STRUCTURE
(2022)
Article
Chemistry, Multidisciplinary
S. Selvaraj, A. Ram Kumar, T. Ahilan, M. Kesavan, S. Gunasekaran, S. Kumaresan
Summary: This study presents a combined theoretical and experimental investigation on oxyclozanide. Various techniques including spectroscopy and computational calculations were employed to characterize the compound and analyze its structure. The results showed excellent correlation between experimental and theoretical findings, confirming the structure of oxyclozanide.
JOURNAL OF THE INDIAN CHEMICAL SOCIETY
(2022)
Article
Chemistry, Physical
Goncagul Serdaroglu, Nesimi Uludag, Naki Colak, Parthasarathi Rajkumar
Summary: In this study, novel nitro containing thiophene derivatives were synthesized and confirmed using spectroscopic methods. The antioxidant activity of these compounds was evaluated and their interaction with human EGFR kinase was explored using cyclic voltammetry and molecular docking.
JOURNAL OF MOLECULAR STRUCTURE
(2023)
Article
Engineering, Electrical & Electronic
A. Asha, P. Jayaprakash, S. Selvaraj, D. Priya Matharasi, P. Rajkumar
Summary: N-butyl-4-nitroaniline (NB4N), an organic chromophore crystal, was synthesized by a slow solvent evaporation method. Single-crystal X-ray diffraction analysis was carried out to determine the cell parameter values. UV-Vis-NIR spectral analysis was performed to investigate the band gap energy and optical quality. FTIR spectral analysis was used to analyze the vibration frequencies. Second Harmonic Generation (SHG) was confirmed via the Kurtz-Perry powder technique. Computational tools were used to analyze the geometry and electronic properties of NB4N. NBO analyses were conducted to analyze the donor and acceptor interaction and stabilisation energy. Quantum chemical evaluations of NLO activity were computed and reported. The thermodynamic characteristics and hyperpolarizability of N-butyl-4-nitroaniline were described.
JOURNAL OF MATERIALS SCIENCE-MATERIALS IN ELECTRONICS
(2023)
Article
Chemistry, Inorganic & Nuclear
A. Ram Kumar, S. Selvaraj, P. Anthoniammal, R. Jothi Ramalingam, Ranjith Balu, P. Jayaprakash, G. P. Sheeja Mol
Summary: Density Functional Theory (DFT) and Hartree-Fock (HF) approaches were used to study the spectroscopic, pharmacological and other molecular properties of fluoroaniline isomers. The energy gap, dipole moment, and ADME properties were investigated, as well as the bonding character and reactive sites of the isomers. Molecular docking simulation revealed their biological activities as enzyme inhibitors.
JOURNAL OF FLUORINE CHEMISTRY
(2023)
Article
Chemistry, Physical
N. Kanagathara, M. Thirunavukkarasu, S. Selvaraj, A. Ram Kumar, M. K. Marchewka, Jan Janczak
Summary: The reaction between L-arginine and methanesulfonic acid in aqueous solution was investigated, and the synthesis method of the resulting salt was solvothermal. The crystal structure of the salt was determined using X-ray diffraction analysis, and the interactions between different crystal structures were studied. Several methods, including vibrational spectrum analyses and molecular orbital evaluations, were used to characterize the salt and assess its properties.
JOURNAL OF MOLECULAR LIQUIDS
(2023)
Article
Materials Science, Multidisciplinary
N. Kanagathara, M. K. Marchewka, M. Thirunavukkarasu, S. Selvaraj, Jan Janczak, An-Ya Lo
Summary: This study investigated the structure, stability, and properties of ADMA crystals. The crystal structure was determined to be orthorhombic with four molecules per unit cell. Density functional theory calculations were used to analyze the bonding interactions, excitation energies, and vibrations of ADMA. The energy of interaction between L-arginine and 3,3-dimethylacrylic acid molecules was calculated, and the charge transport between the cation and anion was determined. The nonlinear optical activity and anti-breast cancer activity of ADMA crystals were also examined.
MATERIALS CHEMISTRY AND PHYSICS
(2023)
Article
Materials Science, Multidisciplinary
P. Shenbagarajan, P. Jayaprakash, S. Krishnan, S. Selvaraj, T. C. Sabari Girisun
Summary: Solvent evaporation was used to successfully develop a nonlinear optical single crystal DNBLVLN. The crystal was confirmed to have an orthorhombic structure and noncentro symmetric P1 space group. FTIR and NMR studies showed the presence of different functional groups in DNBLVLN. The crystal's optical properties were confirmed through UV-visible spectrum. The crystal exhibited positive photo current and fluorescence emission at a wavelength of 492 nm. The crystal's dielectric property, second harmonic generation, and third harmonic generation were also investigated. Nonlinearity coefficient was determined to be 0.7 x 10-11 m/W through Z-scan approach.
Article
Chemistry, Multidisciplinary
A. Ram Kumar, S. Selvaraj, Mohammad Azam, G. P. Sheeja Mol, N. Kanagathara, Mahboob Alam, P. Jayaprakash
Summary: The geometric structure, vibrational frequencies, solvent effects, and various properties of lemonol were investigated experimentally and theoretically. The results showed its stability and reactivity, as well as its binding sites and weak interactions. The in vitro studies confirmed the structure and demonstrated that lemonol acts as a potent inhibitor against the MCF-7 breast cancer cell line.
Article
Chemistry, Physical
R. V. Kabilan, C. Arunagiri, S. Selvaraj, B. Yamini, C. Karnan
Summary: 1,4-Diazabicyclo[2.2.2]octane 4-nitrophenol (DONP) was synthesized and characterized in this study. The structure and vibrational properties of DONP were confirmed through experimental and theoretical analysis. The absorption and emission peaks in the UV-visible and fluorescence spectra were successfully explained based on the computational calculations.
JOURNAL OF MOLECULAR STRUCTURE
(2024)
Article
Chemistry, Multidisciplinary
S. Malathi, K. Jagathy, A. Ram Kumar, S. Selvaraj
Summary: Recently, there has been growing interest in the green synthesis of nanoparticles using plants due to their environmental and economic benefits. This study demonstrates an eco-friendly and low-cost method for synthesizing silver nanoparticles from phenolic compounds found in plant extracts, such as radish and turmeric. The antibacterial activity of these nanoparticles was tested in vivo, with promising results indicating their potential as an alternative to conventional drugs.
PHYSICAL CHEMISTRY RESEARCH
(2022)
Article
Chemistry, Multidisciplinary
S. Selvaraj, A. Ram Kumar, T. Ahilan, M. Kesavan, G. Serdaroglu, P. Rajkumar, M. Mani, S. Gunasekaran, S. Kumaresan
Summary: This study used density functional theory to calculate the structure and spectroscopic properties of 2-ethyl-2-phenylmalonamide, and found good agreement between the theoretical calculations and experimental observations.
PHYSICAL CHEMISTRY RESEARCH
(2022)
Article
Chemistry, Analytical
Elena Naumovska, Gabriel Kofi Nzulu, Laura Mazzei, Arnaud Le Febvrier, Kristina Komander, Martin Magnuson, Max Wolff, Per Eklund, Maths Karlsson
Summary: Results from an infrared spectroscopy study on hydrated nanocrystalline films of BaZr1-xScxO3-x/2 with different Sc concentrations show variations in the O-H stretching bands, indicating different proton configurations. Higher Sc concentrations exhibit a distinct O-H stretching band, while lower Sc concentrations show a broader, weaker band.
VIBRATIONAL SPECTROSCOPY
(2024)