Structure of the DASH/Dam1 complex shows its role at the yeast kinetochore-microtubule interface

Unique Phylogenetic Distributions of the Ska and Dam1 Complexes Support Functional Analogy and Suggest Multiple Parallel Displacements of Ska by Dam1

(2017) Jolien J. E. van Hooff et al.   Genome Biology and Evolution

Automated tilt series alignment and tomographic reconstruction in IMOD

(2017) David N. Mastronarde et al.   JOURNAL OF STRUCTURAL BIOLOGY

MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy

(2017) Shawn Q Zheng et al.   NATURE METHODS

The Ndc80 complex bridges two Dam1 complex rings

(2017) Jae ook Kim et al.   eLife

Structure of the MIND Complex Defines a Regulatory Focus for Yeast Kinetochore Assembly

(2016) Yoana N. Dimitrova et al.   CELL

CCAN Assembly Configures Composite Binding Interfaces to Promote Cross-Linking of Ndc80 Complexes at the Kinetochore

(2016) Gülsah Pekgöz Altunkaya et al.   CURRENT BIOLOGY

Gctf: Real-time CTF determination and correction

(2016) Kai Zhang   JOURNAL OF STRUCTURAL BIOLOGY

High resolution single particle refinement in EMAN2.1

(2016) James M. Bell et al.   METHODS

ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules

(2016) Haim Ashkenazy et al.   NUCLEIC ACIDS RESEARCH

Conserved Tetramer Junction in the Kinetochore Ndc80 Complex

(2016) Roberto Valverde et al.   Cell Reports

Molecular architecture of the Dam1 complex–microtubule interaction

(2016) Thibault Legal et al.   Open Biology

Molecular basis of outer kinetochore assembly on CENP-T

(2016) Pim J Huis in 't Veld et al.   eLife

Diffraction-geometry refinement in theDIALSframework

(2016) David G. Waterman et al.   Acta Crystallographica Section D-Structural Biology

Mechanistic Origin of Microtubule Dynamic Instability and Its Modulation by EB Proteins

(2015) Rui Zhang et al.   CELL

Automatic estimation and correction of anisotropic magnification distortion in electron microscopes

(2015) Timothy Grant et al.   JOURNAL OF STRUCTURAL BIOLOGY

CTFFIND4: Fast and accurate defocus estimation from electron micrographs

(2015) Alexis Rohou et al.   JOURNAL OF STRUCTURAL BIOLOGY

De novo protein structure determination from near-atomic-resolution cryo-EM maps

(2015) Ray Yu-Ruei Wang et al.   NATURE METHODS

The molecular architecture of the Dam1 kinetochore complex is defined by cross-linking based structural modelling

(2015) Alex Zelter et al.   Nature Communications

Measuring the optimal exposure for single particle cryo-EM using a 2.6 Å reconstruction of rotavirus VP6

(2015) Timothy Grant et al.   eLife

Assembling the Protein Architecture of the Budding Yeast Kinetochore-Microtubule Attachment using FRET

(2014) Pavithra Aravamudhan et al.   CURRENT BIOLOGY

Fast pseudolikelihood maximization for direct-coupling analysis of protein structure from many homologous amino-acid sequences

(2014) Magnus Ekeberg et al.   JOURNAL OF COMPUTATIONAL PHYSICS

Deciphering key features in protein structures with the new ENDscript server

(2014) Xavier Robert et al.   NUCLEIC ACIDS RESEARCH

PredictProtein—an open resource for online prediction of protein structural and functional features

(2014) Guy Yachdav et al.   NUCLEIC ACIDS RESEARCH

The Budding Yeast Point Centromere Associates with Two Cse4 Molecules during Mitosis

(2013) Pavithra Aravamudhan et al.   CURRENT BIOLOGY

The Composition, Functions, and Regulation of the Budding Yeast Kinetochore

(2013) Sue Biggins   GENETICS

Molecular requirements for the formation of a kinetochore–microtubule interface by Dam1 and Ndc80 complexes

(2013) Fabienne Lampert et al.   JOURNAL OF CELL BIOLOGY

Conserved and divergent features of kinetochores and spindle microtubule ends from five species

(2013) J. Richard McIntosh et al.   JOURNAL OF CELL BIOLOGY

The challenge of determining handedness in electron tomography and the use of DNA origami gold nanoparticle helices as molecular standards

(2013) Ariane Briegel et al.   JOURNAL OF STRUCTURAL BIOLOGY

SPRING – An image processing package for single-particle based helical reconstruction from electron cryomicrographs

(2013) Ambroise Desfosses et al.   JOURNAL OF STRUCTURAL BIOLOGY

Quantifying the local resolution of cryo-EM density maps

(2013) Alp Kucukelbir et al.   NATURE METHODS

MycoCosm portal: gearing up for 1000 fungal genomes

(2013) Igor V. Grigoriev et al.   NUCLEIC ACIDS RESEARCH

Improved contact prediction in proteins: Using pseudolikelihoods to infer Potts models

(2013) Magnus Ekeberg et al.   PHYSICAL REVIEW E

High-Resolution Comparative Modeling with RosettaCM

(2013) Yifan Song et al.   STRUCTURE

Three-Dimensional Structures of Membrane Proteins from Genomic Sequencing

(2012) Thomas A. Hopf et al.   CELL

Real-space processing of helical filaments in SPARX

(2012) Elmar Behrmann et al.   JOURNAL OF STRUCTURAL BIOLOGY

RELION: Implementation of a Bayesian approach to cryo-EM structure determination

(2012) Sjors H.W. Scheres   JOURNAL OF STRUCTURAL BIOLOGY

Coiled-coil networking shapes cell molecular machinery

(2012) Yongqiang Wang et al.   MOLECULAR BIOLOGY OF THE CELL

Structural and Functional Organization of the Ska Complex, a Key Component of the Kinetochore-Microtubule Interface

(2012) A. Arockia Jeyaprakash et al.   MOLECULAR CELL

GenBank

(2012) Dennis A. Benson et al.   NUCLEIC ACIDS RESEARCH

DelPhi: a comprehensive suite for DelPhi software and associated resources

(2012) Lin Li et al.   BMC Biophysics

Chromatin Signaling to Kinetochores: Transregulation of Dam1 Methylation by Histone H2B Ubiquitination

(2011) John A. Latham et al.   CELL

The Ndc80 Loop Region Facilitates Formation of Kinetochore Attachment to the Dynamic Microtubule Plus End

(2011) Jean-François Maure et al.   CURRENT BIOLOGY

Subunit organization in the Dam1 kinetochore complex and its ring around microtubules

(2011) Vincent H. Ramey et al.   MOLECULAR BIOLOGY OF THE CELL

Direct-coupling analysis of residue coevolution captures native contacts across many protein families

(2011) F. Morcos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

XDS

(2010) Wolfgang Kabsch   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

PHENIX: a comprehensive Python-based system for macromolecular structure solution

(2010) Paul D. Adams et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

The Dam1 complex confers microtubule plus end–tracking activity to the Ndc80 kinetochore complex

(2010) Fabienne Lampert et al.   JOURNAL OF CELL BIOLOGY

Cooperation of the Dam1 and Ndc80 kinetochore complexes enhances microtubule coupling and is regulated by aurora B

(2010) Jerry F. Tien et al.   JOURNAL OF CELL BIOLOGY

The Dam1 ring binds to the E-hook of tubulin and diffuses along the microtubule

(2010) Vincent H. Ramey et al.   MOLECULAR BIOLOGY OF THE CELL

The Ndc80 kinetochore complex forms oligomeric arrays along microtubules

(2010) Gregory M. Alushin et al.   NATURE

Kinetochores’ gripping feat: conformational wave or biased diffusion?

(2010) Charles L. Asbury et al.   TRENDS IN CELL BIOLOGY

MolProbity: all-atom structure validation for macromolecular crystallography

(2009) Vincent B. Chen et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

Biopython: freely available Python tools for computational molecular biology and bioinformatics

(2009) P. J. A. Cock et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Enzymatic assembly of DNA molecules up to several hundred kilobases

(2009) Daniel G Gibson et al.   NATURE METHODS

SPIDER image processing for single-particle reconstruction of biological macromolecules from electron micrographs

(2009) Tanvir R Shaikh et al.   Nature Protocols

Architecture and Flexibility of the Yeast Ndc80 Kinetochore Complex

(2008) Hong-Wei Wang et al.   JOURNAL OF MOLECULAR BIOLOGY

Phosphoregulation and depolymerization-driven movement of the Dam1 complex do not require ring formation

(2008) Daniel R. Gestaut et al.   NATURE CELL BIOLOGY