Multiple nuclear-replicating viruses require the stress-induced protein ZC3H11A for efficient growth

The ZBED6–IGF2 axis has a major effect on growth of skeletal muscle and internal organs in placental mammals

(2018) Shady Younis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Normal human cell proteins that interact with the adenovirus type 5 E1B 55 kDa protein

(2017) George Hung et al.   VIROLOGY

The role of TREX in gene expression and disease

(2016) C. G. Heath et al.   BIOCHEMICAL JOURNAL

Targeting the ATP-dependent formation of herpesvirus ribonucleoprotein particle assembly as an antiviral approach

(2016) Sophie Schumann et al.   Nature Microbiology

A Human Interactome in Three Quantitative Dimensions Organized by Stoichiometries and Abundances

(2015) Marco Y. Hein et al.   CELL

Control of mammalian gene expression by selective mRNA export

(2015) Vihandha O. Wickramasinghe et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

CRISPRdirect: software for designing CRISPR/Cas guide RNA with reduced off-target sites

(2014) Yuki Naito et al.   BIOINFORMATICS

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

The Influenza Virus Neuraminidase Protein Transmembrane and Head Domains Have Coevolved

(2014) Diogo V. da Silva et al.   JOURNAL OF VIROLOGY

Uncovering global SUMOylation signaling networks in a site-specific manner

(2014) Ivo A Hendriks et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

HIV-1 Rev protein specifies the viral RNA export pathway by suppressing TAP/NXF1 recruitment

(2014) Ichiro Taniguchi et al.   NUCLEIC ACIDS RESEARCH

Nuclear Export of Human Hepatitis B Virus Core Protein and Pregenomic RNA Depends on the Cellular NXF1-p15 Machinery

(2014) Ching-Chun Yang et al.   PLoS One

Influenza polymerase encoding mRNAs utilize atypical mRNA nuclear export

(2014) Sean Larsen et al.   Virology Journal

PIPE-CLIP: a comprehensive online tool for CLIP-seq data analysis

(2014) Beibei Chen et al.   GENOME BIOLOGY

DNA Virus Replication Compartments

(2013) M. Schmid et al.   JOURNAL OF VIROLOGY

System-wide identification of RNA-binding proteins by interactome capture

(2013) Alfredo Castello et al.   Nature Protocols

Genome engineering using the CRISPR-Cas9 system

(2013) F Ann Ran et al.   Nature Protocols

The adenovirus VA RNA-derived miRNAs are not essential for lytic virus growth in tissue culture cells

(2013) Wael Kamel et al.   NUCLEIC ACIDS RESEARCH

RNA-Guided Human Genome Engineering via Cas9

(2013) P. Mali et al.   SCIENCE

RSeQC: quality control of RNA-seq experiments

(2012) Liguo Wang et al.   BIOINFORMATICS

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Insights into RNA Biology from an Atlas of Mammalian mRNA-Binding Proteins

(2012) Alfredo Castello et al.   CELL

The Proteins PDIP3 and ZC11A Associate with the Human TREX Complex in an ATP-Dependent Manner and Function in mRNA Export

(2012) Eric G. Folco et al.   PLoS One

Structural Basis for the Recognition of Cellular mRNA Export Factor REF by Herpes Viral Proteins HSV-1 ICP27 and HVS ORF57

(2011) Richard B. Tunnicliffe et al.   PLoS Pathogens

ATP is required for interactions between UAP56 and two conserved mRNA export proteins, Aly and CIP29, to assemble the TREX complex

(2010) K. Dufu et al.   GENES & DEVELOPMENT

Individual influenza A virus mRNAs show differential dependence on cellular NXF1/TAP for their nuclear export

(2010) E. K. C. Read et al.   JOURNAL OF GENERAL VIROLOGY

Export of Adenoviral Late mRNA from the Nucleus Requires the Nxf1/Tap Export Receptor

(2010) G. Yatherajam et al.   JOURNAL OF VIROLOGY

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks

(2009) Gabriela Bindea et al.   BIOINFORMATICS

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

ZBED6, a Novel Transcription Factor Derived from a Domesticated DNA Transposon Regulates IGF2 Expression and Muscle Growth

(2009) Ellen Markljung et al.   PLOS BIOLOGY

Control of mRNA Export by Adenovirus E4orf6 and E1B55K Proteins during Productive Infection Requires E4orf6 Ubiquitin Ligase Activity

(2008) P. Blanchette et al.   JOURNAL OF VIROLOGY

Genome-Wide Survey and Expression Profiling of CCCH-Zinc Finger Family Reveals a Functional Module in Macrophage Activation

(2008) Jian Liang et al.   PLoS One

Recruitment of the Complete hTREX Complex Is Required for Kaposi's Sarcoma–Associated Herpesvirus Intronless mRNA Nuclear Export and Virus Replication

(2008) James R. Boyne et al.   PLoS Pathogens