Use of in-field bioreactors demonstrate groundwater filtration influences planktonic bacterial community assembly, but not biofilm composition

Temporal Dynamics of In-Field Bioreactor Populations Reflect the Groundwater System and Respond Predictably to Perturbation

(2017) Andrew J. King et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Novel arsenic-transforming bacteria and the diversity of their arsenic-related genes and enzymes arising from arsenic-polluted freshwater sediment

(2017) Maria L. S. Suhadolnik et al.   Scientific Reports

Microbial interactions and community assembly at microscales

(2016) Otto X Cordero et al.   CURRENT OPINION IN MICROBIOLOGY

Sediminibacterium aquarii sp. nov., isolated from sediment in a fishbowl

(2016) Yonghoon Kim et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Spatial and successional dynamics of microbial biofilm communities in a grassland stream ecosystem

(2016) Allison M. Veach et al.   MOLECULAR ECOLOGY

The ecology and biogeochemistry of stream biofilms

(2016) Tom J. Battin et al.   NATURE REVIEWS MICROBIOLOGY

Natural Bacterial Communities Serve as Quantitative Geochemical Biosensors

(2015) Mark B. Smith et al.   mBio

Comparative metagenomics reveals impact of contaminants on groundwater microbiomes

(2015) Christopher L. Hemme et al.   Frontiers in Microbiology

Scalable production of microbially mediated zinc sulfide nanoparticles and application to functional thin films

(2014) Ji-Won Moon et al.   Acta Biomaterialia

Stoichiometry and temperature sensitivity of methanogenesis and CO2 production from saturated polygonal tundra in Barrow, Alaska

(2014) Taniya Roy Chowdhury et al.   GLOBAL CHANGE BIOLOGY

Sediminibacterium goheungense sp. nov., isolated from a freshwater reservoir

(2014) H. Kang et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Microbial Community Responses to Organophosphate Substrate Additions in Contaminated Subsurface Sediments

(2014) Robert J. Martinez et al.   PLoS One

Improved Yield of High Molecular Weight DNA Coincides with Increased Microbial Diversity Access from Iron Oxide Cemented Sub-Surface Clay Environments

(2014) Richard A. Hurt et al.   PLoS One

Role of Intracellular Stochasticity in Biofilm Growth. Insights from Population Balance Modeling

(2013) Che-Chi Shu et al.   PLoS One

Sediminibacterium ginsengisoli sp. nov., isolated from soil of a ginseng field, and emended descriptions of the genus Sediminibacterium and of Sediminibacterium salmoneum

(2012) Y.-J. Kim et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Unraveling assembly of stream biofilm communities

(2012) Katharina Besemer et al.   ISME Journal

Sequencing Intractable DNA to Close Microbial Genomes

(2012) Richard A. Hurt et al.   PLoS One

Fundamentals of Microbial Community Resistance and Resilience

(2012) Ashley Shade et al.   Frontiers in Microbiology

A Limited Microbial Consortium Is Responsible for Extended Bioreduction of Uranium in a Contaminated Aquifer

(2011) Thomas M. Gihring et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Phase Preference by Active, Acetate-Utilizing Bacteria at the Rifle, CO Integrated Field Research Challenge Site

(2011) Lee J. Kerkhof et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Acetate Availability and its Influence on Sustainable Bioremediation of Uranium-Contaminated Groundwater

(2011) Kenneth H. Williams et al.   GEOMICROBIOLOGY JOURNAL

Significant Association between Sulfate-Reducing Bacteria and Uranium-Reducing Microbial Communities as Revealed by a Combined Massively Parallel Sequencing-Indicator Species Approach

(2010) E. Cardenas et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

A permeable reactive barrier for the bioremediation of BTEX-contaminated groundwater: Microbial community distribution and removal efficiencies

(2010) Chi-Hui Yeh et al.   JOURNAL OF HAZARDOUS MATERIALS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Electron Transfer System of Syntrophically Grown Desulfovibrio vulgaris

(2009) C. B. Walker et al.   JOURNAL OF BACTERIOLOGY

Mineralogical characterization of saprolite at the FRC background site in Oak Ridge, Tennessee

(2009) Young-Jin Kim et al.   Environmental geology.

Microbial Communities in Contaminated Sediments, Associated with Bioremediation of Uranium to Submicromolar Levels

(2008) E. Cardenas et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Functional Diversity and Electron Donor Dependence of Microbial Populations Capable of U(VI) Reduction in Radionuclide-Contaminated Subsurface Sediments

(2008) D. M. Akob et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Quorum sensing inPseudomonas aeruginosabiofilms

(2008) T. R. de Kievit   ENVIRONMENTAL MICROBIOLOGY

Bacterial community succession during in situ uranium bioremediation: spatial similarities along controlled flow paths

(2008) Chiachi Hwang et al.   ISME Journal

Resistance, resilience, and redundancy in microbial communities

(2008) S. D. Allison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Endogenous oxidative stress produces diversity and adaptability in biofilm communities

(2008) B. R. Boles et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA