Candidate genes for first flower node identified in pepper using combined SLAF-seq and BSA

Construction of a high-density genetic map by specific locus amplified fragment sequencing (SLAF-seq) and its application to Quantitative Trait Loci (QTL) analysis for boll weight in upland cotton (Gossypium hirsutum.)

(2016) Zhen Zhang et al.   BMC PLANT BIOLOGY

An ultra-high-density bin map facilitates high-throughput QTL mapping of horticultural traits in pepper (Capsicum annuum)

(2016) Koeun Han et al.   DNA RESEARCH

Heterologous expression of an RNA-binding protein affects flowering time as well as other developmental processes in Solanaceae

(2016) Hyun Min Kim et al.   MOLECULAR BREEDING

Mapping the Flavor Contributing Traits on "Fengwei Melon" (Cucumis melo L.) Chromosomes Using Parent Resequencing and Super Bulked-Segregant Analysis

(2016) Hong Zhang et al.   PLoS One

Rapid identification of QTLs underlying resistance to Cucumber mosaic virus in pepper (Capsicum frutescens)

(2016) Guangjun Guo et al.   THEORETICAL AND APPLIED GENETICS

Bayesian analysis of interacting quantitative trait loci (QTL) for yield traits in tomato

(2016) Liu Yang et al.   AFRICAN JOURNAL OF BIOTECHNOLOGY

Rapid Identification of Candidate Genes for Seed Weight Using the SLAF-Seq Method in Brassica napus

(2016) Xinxin Geng et al.   PLoS One

Development of a SNP array and its application to genetic mapping and diversity assessment in pepper (Capsicum spp.)

(2016) Jiaowen Cheng et al.   Scientific Reports

High-density genetic map construction and identification of a locus controlling weeping trait in an ornamental woody plant (Prunus mume Sieb. et Zucc)

(2015) J. Zhang et al.   DNA RESEARCH

High Resolution Consensus Mapping of Quantitative Trait Loci for Fiber Strength, Length and Micronaire on Chromosome 25 of the Upland Cotton (Gossypium hirsutum L.)

(2015) Zhen Zhang et al.   PLoS One

Genetic mapping of the nulliplex-branch gene (gb_nb1) in cotton using next-generation sequencing

(2015) Wei Chen et al.   THEORETICAL AND APPLIED GENETICS

CaAP2 transcription factor is a candidate gene for a flowering repressor and a candidate for controlling natural variation of flowering time in Capsicum annuum

(2015) Yelena Borovsky et al.   THEORETICAL AND APPLIED GENETICS

Construction of an Interspecific Genetic Map Based on InDel and SSR for Mapping the QTLs Affecting the Initiation of Flower Primordia in Pepper (Capsicum spp.)

(2015) Shu Tan et al.   PLoS One

Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species

(2014) Seungill Kim et al.   NATURE GENETICS

Capsicum annuum S(CaS) promotes reproductive transition and is required for flower formation in pepper (Capsicum annuum)

(2014) Oded Cohen et al.   NEW PHYTOLOGIST

MAIN-LIKE1 is a crucial factor for correct cell division and differentiation inArabidopsis thaliana

(2014) Christine Ühlken et al.   PLANT JOURNAL

A High-Density Genetic Map for Soybean Based on Specific Length Amplified Fragment Sequencing

(2014) Zhaoming Qi et al.   PLoS One

QTL-seq identifies an early flowering QTL located near Flowering Locus T in cucumber

(2014) Hongfeng Lu et al.   THEORETICAL AND APPLIED GENETICS

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Detection and genotyping of restriction fragment associated polymorphisms in polyploid crops with a pseudo-reference sequence: a case study in allotetraploid Brassica napus

(2013) Xun Chen et al.   BMC GENOMICS

MMAPPR: Mutation Mapping Analysis Pipeline for Pooled RNA-seq

(2013) J. T. Hill et al.   GENOME RESEARCH

QTL mapping for important horticultural traits in pepper (Capsicum annuum L.)

(2013) Neeraj Dwivedi et al.   JOURNAL OF PLANT BIOCHEMISTRY AND BIOTECHNOLOGY

QTL-seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations

(2013) Hiroki Takagi et al.   PLANT JOURNAL

SLAF-seq: An Efficient Method of Large-Scale De Novo SNP Discovery and Genotyping Using High-Throughput Sequencing

(2013) Xiaowen Sun et al.   PLoS One

MutMap+: Genetic Mapping and Mutant Identification without Crossing in Rice

(2013) Rym Fekih et al.   PLoS One

Multi-trait and multi-environment QTL analyses of yield and a set of physiological traits in pepper

(2013) N. A. Alimi et al.   THEORETICAL AND APPLIED GENETICS

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

CaJOINTLESS is a MADS-box gene involved in suppression of vegetative growth in all shoot meristems in pepper

(2012) O. Cohen et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome sequencing reveals agronomically important loci in rice using MutMap

(2012) Akira Abe et al.   NATURE BIOTECHNOLOGY

Development of a high resolution melting (HRM) marker linked to genic male sterility in Capsicum annuum L.

(2012) Heung-Ryul Lee et al.   PLANT BREEDING

CaHAM is autoregulated and regulates CaSTM expression and is required for shoot apical meristem organization in pepper

(2012) Rakefet David-Schwartz et al.   PLANT SCIENCE

Arabidopsis SNARE protein SEC22 is essential for gametophyte development and maintenance of Golgi-stack integrity

(2011) Farid El-Kasmi et al.   PLANT JOURNAL

CaBLIND regulates axillary meristem initiation and transition to flowering in pepper

(2011) Dar Jeifetz et al.   PLANTA

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Three AFLP markers tightly linked to the genic male sterility ms 3 gene in chili pepper (Capsicum annuum L.) and conversion to a CAPS marker

(2009) Jundae Lee et al.   EUPHYTICA

Co-ordinated regulation of flowering time, plant architecture and growth by FASCICULATE: the pepper orthologue of SELF PRUNING

(2009) T. Elitzur et al.   JOURNAL OF EXPERIMENTAL BOTANY

The Making of a Compound Inflorescence in Tomato and Related Nightshades

(2008) Zachary B Lippman et al.   PLOS BIOLOGY