Role of BASIC PENTACYSTEINE transcription factors in a subset of cytokinin signaling responses

Cis and trans determinants of epigenetic silencing by Polycomb repressive complex 2 in Arabidopsis

(2017) Jun Xiao et al.   NATURE GENETICS

Cytokinin induces genome-wide binding of the type-B response regulator ARR10 to regulate growth and development inArabidopsis

(2017) Yan O. Zubo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

TCP factors: new kids on the signaling block

(2016) Michael Nicolas et al.   CURRENT OPINION IN PLANT BIOLOGY

The Role of Cytokinin During Infection of Arabidopsis thaliana by the Cyst Nematode Heterodera schachtii

(2016) Carly M. Shanks et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Plant Nitrogen Acquisition Under Low Availability: Regulation of Uptake and Root Architecture

(2016) Takatoshi Kiba et al.   PLANT AND CELL PHYSIOLOGY

The Yin-Yang of Hormones: Cytokinin and Auxin Interactions in Plant Development

(2015) G. Eric Schaller et al.   PLANT CELL

The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis

(2015) Tracy Raines et al.   PLANT JOURNAL

The Arabidopsis GAGA-Binding Factor BASIC PENTACYSTEINE6 Recruits the POLYCOMB-REPRESSIVE COMPLEX1 Component LIKE HETEROCHROMATIN PROTEIN1 to GAGA DNA Motifs

(2015) Andreas Hecker et al.   PLANT PHYSIOLOGY

Genome Wide Binding Site Analysis Reveals Transcriptional Coactivation of Cytokinin-Responsive Genes by DELLA Proteins

(2015) Nora Marín-de la Rosa et al.   PLoS Genetics

Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance

(2014) Sara Simonini et al.   JOURNAL OF EXPERIMENTAL BOTANY

Normalization of RNA-seq data using factor analysis of control genes or samples

(2014) Davide Risso et al.   NATURE BIOTECHNOLOGY

The bHLH Transcription Factor HBI1 Mediates the Trade-Off between Growth and Pathogen-Associated Molecular Pattern-Triggered Immunity in Arabidopsis

(2014) M. Fan et al.   PLANT CELL

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Regulation of Leaf Maturation by Chromatin-Mediated Modulation of Cytokinin Responses

(2013) Idan Efroni et al.   DEVELOPMENTAL CELL

Identification of Cytokinin-Responsive Genes Using Microarray Meta-Analysis and RNA-Seq in Arabidopsis

(2013) A. Bhargava et al.   PLANT PHYSIOLOGY

Evolution goes GAGA: GAGA binding proteins across kingdoms

(2012) Nathalie Berger et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Exploiting sparseness in de novo genome assembly

(2012) Chengxi Ye et al.   BMC BIOINFORMATICS

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

BASIC PENTACYSTEINE Proteins Mediate MADS Domain Complex Binding to the DNA for Tissue-Specific Expression of Target Genes inArabidopsis

(2012) Sara Simonini et al.   PLANT CELL

The Arabidopsis O-Linked N-Acetylglucosamine Transferase SPINDLY Interacts with Class I TCPs to Facilitate Cytokinin Responses in Leaves and Flowers

(2012) E. Steiner et al.   PLANT CELL

DREME: motif discovery in transcription factor ChIP-seq data

(2011) Timothy L. Bailey   BIOINFORMATICS

Cell-type specific and combinatorial usage of diverse transcription factors revealed by genome-wide binding studies in multiple human cells

(2011) B.-K. Lee et al.   GENOME RESEARCH

Cytokinin Regulates the Activity of Reproductive Meristems, Flower Organ Size, Ovule Formation, and Thus Seed Yield inArabidopsis thaliana

(2011) Isabel Bartrina et al.   PLANT CELL

Overlapping and antagonistic activities of BASIC PENTACYSTEINE genes affect a range of developmental processes in Arabidopsis

(2011) Mona M. Monfared et al.   PLANT JOURNAL

Alanine Zipper-Like Coiled-Coil Domains Are Necessary for Homotypic Dimerization of Plant GAGA-Factors in the Nucleus and Nucleolus

(2011) Dierk Wanke et al.   PLoS One

Transcriptional Regulation of Ribosome Components Are Determined by Stress According to Cellular Compartments in Arabidopsis thaliana

(2011) Rodnay Sormani et al.   PLoS One

ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data

(2010) Lihua J Zhu et al.   BMC BIOINFORMATICS

Cytokinin signaling and transcriptional networks

(2010) Cristiana T Argueso et al.   CURRENT OPINION IN PLANT BIOLOGY

The Cytokinin-Activated Transcription Factor ARR2 Promotes Plant Immunity via TGA3/NPR1-Dependent Salicylic Acid Signaling in Arabidopsis

(2010) Jaemyung Choi et al.   DEVELOPMENTAL CELL

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

TCP Transcription Factors Regulate the Activities of ASYMMETRIC LEAVES1 and miR164, as Well as the Auxin Response, during Differentiation of Leaves in Arabidopsis

(2010) T. Koyama et al.   PLANT CELL

The subcellular distribution of the Arabidopsis histidine phosphotransfer proteins is independent of cytokinin signaling

(2010) Jayson A. Punwani et al.   PLANT JOURNAL

A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana

(2010) Xiaofei Yu et al.   PLANT JOURNAL

DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro

(2010) Luise H. Brand et al.   Plant Methods

The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets

(2009) J. W. Nicol et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Cytokinin action in plant development

(2009) Tomáš Werner et al.   CURRENT OPINION IN PLANT BIOLOGY

Combinatorial binding predicts spatio-temporal cis-regulatory activity

(2009) Robert P. Zinzen et al.   NATURE

Environmental perception avenues: the interaction of cytokinin and environmental response pathways

(2009) CRISTIANA T. ARGUESO et al.   PLANT CELL AND ENVIRONMENT

VirtualPlant: A Software Platform to Support Systems Biology Research

(2009) M. S. Katari et al.   PLANT PHYSIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

BioVenn – a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams

(2008) Tim Hulsen et al.   BMC GENOMICS

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY

Three Type-B Response Regulators, ARR1, ARR10 and ARR12, Play Essential but Redundant Roles in Cytokinin Signal Transduction Throughout the Life Cycle of Arabidopsis thaliana

(2007) Kai Ishida et al.   PLANT AND CELL PHYSIOLOGY