The root transcriptome of Achyranthes bidentata and the identification of the genes involved in the replanting benefit

Arsenic-induced stress activates sulfur metabolism in different organs of garlic ( Allium sativum L.) plants accompanied by a general decline of the NADPH-generating systems in roots

(2017) Carmelo Ruíz-Torres et al.   JOURNAL OF PLANT PHYSIOLOGY

Achyranthes bidentate saponins protect rat articular chondrocytes against interleukin-1β-induced inflammation and apoptosis in vitro

(2017) Xian-Xiang Xu et al.   KAOHSIUNG JOURNAL OF MEDICAL SCIENCES

Identification of critical genes associated with lignin biosynthesis in radish (Raphanus sativus L.) by de novo transcriptome sequencing

(2017) Haiyang Feng et al.   MOLECULAR GENETICS AND GENOMICS

Arabidopsis thaliana GLUTATHIONE-S -TRANSFERASE THETA 2 interacts with RSI1/FLD to activate systemic acquired resistance

(2017) Zeeshan Zahoor Banday et al.   MOLECULAR PLANT PATHOLOGY

A role for APX1 gene in lead tolerance in Arabidopsis thaliana

(2017) Li Jiang et al.   PLANT SCIENCE

SWATH label-free proteomics analyses revealed the roles of oxidative stress and antioxidant defensing system in sclerotia formation of Polyporus umbellatus

(2017) Bing Li et al.   Scientific Reports

The Phenylpropanoid Pathway and Lignin in Defense against Ganoderma boninense Colonized Root Tissues in Oil Palm (Elaeis guineensis Jacq.)

(2017) Nisha T. Govender et al.   Frontiers in Plant Science

Comparative RNA-Sequence Transcriptome Analysis of Phenolic Acid Metabolism in Salvia miltiorrhiza, a Traditional Chinese Medicine Model Plant

(2017) Zhenqiao Song et al.   International Journal of Genomics

Candidate genes and molecular markers associated with heat tolerance in colonial Bentgrass

(2017) David Jespersen et al.   PLoS One

OsMYC2, an essential factor for JA-inductive sakuranetin production in rice, interacts with MYC2-like proteins that enhance its transactivation ability

(2017) Satoshi Ogawa et al.   Scientific Reports

A broadleaf species enhances an autotoxic conifers growth through belowground chemical interactions

(2016) Zhi-Chao Xia et al.   ECOLOGY

De novo transcriptome sequencing and analysis of freshwater snail (Radix balthica) to discover genes and pathways affected by exposure to oxazepam

(2016) Jean-Yves Mazzitelli et al.   ECOTOXICOLOGY

Transcriptome-based identification of genes revealed differential expression profiles and lignin accumulation during root development in cultivated and wild carrots

(2016) Guang-Long Wang et al.   PLANT CELL REPORTS

Jasmonic Acid Enhances Al-Induced Root Growth Inhibition

(2016) Zhong-Bao Yang et al.   PLANT PHYSIOLOGY

Arabidopsis ERF1 Mediates Cross-Talk between Ethylene and Auxin Biosynthesis during Primary Root Elongation by Regulating ASA1 Expression

(2016) Jie-Li Mao et al.   PLoS Genetics

Transcriptome Analysis to Identify the Putative Biosynthesis and Transport Genes Associated with the Medicinal Components of Achyranthes bidentata Bl.

(2016) Jinting Li et al.   Frontiers in Plant Science

Structural evidence forArabidopsisglutathione transferaseAtGSTF2 functioning as a transporter of small organic ligands

(2016) Laziana Ahmad et al.   FEBS Open Bio

The Sublethal Effects of β-Ecdysterone, a Highly Active Compound from Achyranthes bidentata Blume, on Grape Phylloxera, Daktulosphaira vitifoliae Fitch

(2016) Yongqiang Liu et al.   PLoS One

Down-regulation of p-coumaroyl quinate/shikimate 3′-hydroxylase (C3′H) and cinnamate 4-hydroxylase (C4H) genes in the lignin biosynthetic pathway of Eucalyptus urophylla × E. grandis leads to improved sugar release

(2015) Robert W. Sykes et al.   Biotechnology for Biofuels

De novo transcriptome sequence and identification of major bast-related genes involved in cellulose biosynthesis in jute (Corchorus capsularis L.)

(2015) Liwu Zhang et al.   BMC GENOMICS

How efficiently do corn- and soybean-based cropping systems use water? A systems modeling analysis

(2015) Ranae Dietzel et al.   GLOBAL CHANGE BIOLOGY

Analysis of integrated multiple ‘omics’ datasets reveals the mechanisms of initiation and determination in the formation of tuberous roots inRehmannia glutinosa

(2015) Mingjie Li et al.   JOURNAL OF EXPERIMENTAL BOTANY

Linking Jasmonic Acid Signaling, Root Exudates, and Rhizosphere Microbiomes

(2015) Lilia C. Carvalhais et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Roles of cell wall peroxidases in plant development

(2015) Edith Francoz et al.   PHYTOCHEMISTRY

ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis

(2015) Hani Kim et al.   PLANT MOLECULAR BIOLOGY

Ethylene Inhibits Root Elongation during Alkaline Stress through AUXIN1 and Associated Changes in Auxin Accumulation

(2015) Juan Li et al.   PLANT PHYSIOLOGY

Cyclic nucleotide gated channel gene family in tomato: genome-wide identification and functional analyses in disease resistance

(2015) Mumtaz A. Saand et al.   Frontiers in Plant Science

Growth and physiological changes in continuously cropped eggplant (Solanum melongena L.) upon relay intercropping with garlic (Allium sativum L.)

(2015) Mengyi Wang et al.   Frontiers in Plant Science

Root proteome of rice studied by iTRAQ provides integrated insight into aluminum stress tolerance mechanisms in plants

(2014) Zhan Qi Wang et al.   Journal of Proteomics

Transcriptome-wide identification of the genes responding to replanting disease in Rehmannia glutinosa L. roots

(2014) Yan Hui Yang et al.   MOLECULAR BIOLOGY REPORTS

Over-Expression of a Rice Tau Class Glutathione S-Transferase Gene Improves Tolerance to Salinity and Oxidative Stresses in Arabidopsis

(2014) Raghvendra Sharma et al.   PLoS One

Root architecture and root and tuber crop productivity

(2014) Arthur Q. Villordon et al.   TRENDS IN PLANT SCIENCE

Hormonal crosstalk for root development: a combined experimental and modeling perspective

(2014) Junli Liu et al.   Frontiers in Plant Science

Transcriptional profiling of sweetpotato (Ipomoea batatas) roots indicates down-regulation of lignin biosynthesis and up-regulation of starch biosynthesis at an early stage of storage root formation

(2013) Nurit Firon et al.   BMC GENOMICS

Control ofArabidopsisRoot Development

(2012) Jalean J. Petricka et al.   Annual Review of Plant Biology

A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

(2012) M.-A. Dillies et al.   BRIEFINGS IN BIOINFORMATICS

Glutathione Is a Key Player in Metal-Induced Oxidative Stress Defenses

(2012) Marijke Jozefczak et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Down-regulation of theIbEXP1gene enhanced storage root development in sweetpotato

(2012) Seol Ah Noh et al.   JOURNAL OF EXPERIMENTAL BOTANY

The role of auxin and cytokinin signalling in specifying the root architecture of Arabidopsis thaliana

(2012) Daniele Muraro et al.   JOURNAL OF THEORETICAL BIOLOGY

Impact of the Absence of Stem-Specific  -Glucosidases on Lignin and Monolignols

(2012) A. Chapelle et al.   PLANT PHYSIOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Auxin Biosynthesis and Its Role in Plant Development

(2010) Yunde Zhao   Annual Review of Plant Biology

Expression Profiling of Cassava Storage Roots Reveals an Active Process of Glycolysis/GluconeogenesisF

(2010) Jun Yang et al.   Journal of Integrative Plant Biology

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

Biological roles of cyclic-nucleotide-gated ion channels in plants: What we know and don’t know about this 20 member ion channel familyThis paper is one of a selection published in a Special Issue comprising papers presented at the 50th Annual Meeting of the Canadian Society of Plant Physiologists (CSPP) held at the University of Ottawa, Ontario, in June 2008.

(2009) Kimberley Chin et al.   Botany

Ethylene receptor ETR2 controls trichome branching by regulating microtubule assembly in Arabidopsis thaliana

(2009) J. M. Plett et al.   JOURNAL OF EXPERIMENTAL BOTANY

SAUR39, a Small Auxin-Up RNA Gene, Acts as a Negative Regulator of Auxin Synthesis and Transport in Rice

(2009) S. Kant et al.   PLANT PHYSIOLOGY

Improved base calling for the Illumina Genome Analyzer using machine learning strategies

(2009) Martin Kircher et al.   GENOME BIOLOGY

News from the frontline: recent insights into PAMP-triggered immunity in plants

(2008) Benjamin Schwessinger et al.   CURRENT OPINION IN PLANT BIOLOGY