Genetic architecture underlying the lignin biosynthesis pathway involves noncoding RNAs and transcription factors for growth and wood properties in Populus

Distant eQTLs and Non-coding Sequences Play Critical Roles in Regulating Gene Expression and Quantitative Trait Variation in Maize

(2017) Haijun Liu et al.   Molecular Plant

The genetic architecture of amino acids dissection by association and linkage analysis in maize

(2017) Min Deng et al.   PLANT BIOTECHNOLOGY JOURNAL

Population genomic analysis of gibberellin-responsive long non-coding RNAs inPopulus

(2016) Jiaxing Tian et al.   JOURNAL OF EXPERIMENTAL BOTANY

Adaptive evolution and functional innovation of Populus -specific recently evolved microRNAs

(2016) Jianbo Xie et al.   NEW PHYTOLOGIST

PeTMbase: A Database of Plant Endogenous Target Mimics (eTMs)

(2016) Gökhan Karakülah et al.   PLoS One

Lignification: different mechanisms for a versatile polymer

(2015) Aline Voxeur et al.   CURRENT OPINION IN PLANT BIOLOGY

Genome-wide association mapping of growth dynamics detects time-specific and general quantitative trait loci

(2015) Johanna A. Bac-Molenaar et al.   JOURNAL OF EXPERIMENTAL BOTANY

PlantPAN 2.0: an update of plant promoter analysis navigator for reconstructing transcriptional regulatory networks in plants

(2015) Chi-Nga Chow et al.   NUCLEIC ACIDS RESEARCH

Association genetics in Populus reveals the interactions between Pt-miR397a and its target genes

(2015) Jinhui Chen et al.   Scientific Reports

From genome to function by studying eQTLs

(2014) Harm-Jan Westra et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE

Variation in growth, leaf, and wood property traits of Chinese white poplar (Populus tomentosa), a major industrial tree species in Northern China

(2014) Qingzhang Du et al.   CANADIAN JOURNAL OF FOREST RESEARCH

Identification of additive, dominant, and epistatic variation conferred by key genes in cellulose biosynthesis pathway in Populus tomentosa

(2014) Q. Du et al.   DNA RESEARCH

Metabolome-based genome-wide association study of maize kernel leads to novel biochemical insights

(2014) Weiwei Wen et al.   Nature Communications

Cis and Trans Effects of Human Genomic Variants on Gene Expression

(2014) Julien Bryois et al.   PLoS Genetics

Epistasis and quantitative traits: using model organisms to study gene–gene interactions

(2013) Trudy F. C. Mackay   NATURE REVIEWS GENETICS

Pleiotropy in complex traits: challenges and strategies

(2013) Nadia Solovieff et al.   NATURE REVIEWS GENETICS

Ptr-miR397a is a negative regulator of laccase genes affecting lignin content in Populus trichocarpa

(2013) S. Lu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genic and nongenic contributions to natural variation of quantitative traits in maize

(2012) X. Li et al.   GENOME RESEARCH

Genetic Diversity and Population Structure of Chinese White Poplar (Populus tomentosa) Revealed by SSR Markers

(2012) Qingzhang Du et al.   JOURNAL OF HEREDITY

Genome-wide association study dissects the genetic architecture of oil biosynthesis in maize kernels

(2012) Hui Li et al.   NATURE GENETICS

Genome resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest treePopulus trichocarpa

(2012) Gancho T. Slavov et al.   NEW PHYTOLOGIST

Association genetics of chemical wood properties in black poplar (Populus nigra)

(2012) Fernando P. Guerra et al.   NEW PHYTOLOGIST

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Association Genetics of Wood Physical Traits in the Conifer White Spruce and Relationships With Gene Expression

(2011) Jean Beaulieu et al.   GENETICS

Evaluating the effective numbers of independent tests and significant p-value thresholds in commercial genotyping arrays and public imputation reference datasets

(2011) Miao-Xin Li et al.   HUMAN GENETICS

Transcriptional networks for lignin biosynthesis: more complex than we thought?

(2011) Qiao Zhao et al.   TRENDS IN PLANT SCIENCE

The Genetics of Lignin Biosynthesis: Connecting Genotype to Phenotype

(2010) Nicholas D. Bonawitz et al.   Annual Review of Genetics

Association genetics of traits controlling lignin and cellulose biosynthesis in black cottonwood (Populus trichocarpa, Salicaceae) secondary xylem

(2010) Jill L. Wegrzyn et al.   NEW PHYTOLOGIST

Association genetics of complex traits in plants

(2010) Pär K. Ingvarsson et al.   NEW PHYTOLOGIST

Lignin and Biomass: A Negative Correlation for Wood Formation and Lignin Content in Trees

(2010) E. Novaes et al.   PLANT PHYSIOLOGY

Antisense Down-Regulation of 4CL Expression Alters Lignification, Tree Growth, and Saccharification Potential of Field-Grown Poplar

(2010) S. L. Voelker et al.   PLANT PHYSIOLOGY

Diversification in the genetic architecture of gene expression and transcriptional networks in organ differentiation of Populus

(2010) D. R. Drost et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The sucrose synthase gene family in Populus: structure, expression, and evolution

(2010) Deqiang Zhang et al.   Tree Genetics & Genomes

Towards a Systems Approach for Lignin Biosynthesis in Populus trichocarpa: Transcript Abundance and Specificity of the Monolignol Biosynthetic Genes

(2009) Rui Shi et al.   PLANT AND CELL PHYSIOLOGY

Parallel and serial computing tools for testing single-locus and epistatic SNP effects of quantitative traits in genome-wide association studies

(2008) Li Ma et al.   BMC BIOINFORMATICS

Mathematical properties of the measure of linkage disequilibrium

(2008) Jenna M. VanLiere et al.   THEORETICAL POPULATION BIOLOGY