A Vitis vinifera basic helix-loop-helix transcription factor enhances plant cell size, vegetative biomass and reproductive yield

Leaf epinasty and auxin: A biochemical and molecular overview

(2016) Luisa M. Sandalio et al.   PLANT SCIENCE

Rewiring of jasmonate and phytochrome B signalling uncouples plant growth-defense tradeoffs

(2016) Marcelo L. Campos et al.   Nature Communications

Iron- and Ferritin-Dependent Reactive Oxygen Species Distribution: Impact on Arabidopsis Root System Architecture

(2015) Guilhem Reyt et al.   Molecular Plant

SAUR Proteins as Effectors of Hormonal and Environmental Signals in Plant Growth

(2015) Hong Ren et al.   Molecular Plant

Pseudomonas syringaeEffector AvrPphB Suppresses AvrB-Induced Activation of RPM1 but Not AvrRpm1-Induced Activation

(2015) Andrew R. Russell et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

ROTS: reproducible RNA-seq biomarker detector—prognostic markers for clear cell renal cell cancer

(2015) Fatemeh Seyednasrollah et al.   NUCLEIC ACIDS RESEARCH

Auxin influx importers modulate serration along the leaf margin

(2015) Ania Kasprzewska et al.   PLANT JOURNAL

Molecular dissection of a rice microtubule-associated RING finger protein and its potential role in salt tolerance in Arabidopsis

(2015) Sung Don Lim et al.   PLANT MOLECULAR BIOLOGY

Auxin Influx Carriers Control Vascular Patterning and Xylem Differentiation in Arabidopsis thaliana

(2015) Norma Fàbregas et al.   PLoS Genetics

Auxin Import and Local Auxin Biosynthesis Are Required for Mitotic Divisions, Cell Expansion and Cell Specification during Female Gametophyte Development in Arabidopsis thaliana

(2015) Aneesh Panoli et al.   PLoS One

SNARE VTI13 plays a unique role in endosomal trafficking pathways associated with the vacuole and is essential for cell wall organization and root hair growth in arabidopsis

(2014) Emily R. Larson et al.   ANNALS OF BOTANY

jvenn: an interactive Venn diagram viewer

(2014) Philippe Bardou et al.   BMC BIOINFORMATICS

Diversity and specificity: auxin perception and signaling through the TIR1/AFB pathway

(2014) Renhou Wang et al.   CURRENT OPINION IN PLANT BIOLOGY

Ward’s Hierarchical Agglomerative Clustering Method: Which Algorithms Implement Ward’s Criterion?

(2014) Fionn Murtagh et al.   JOURNAL OF CLASSIFICATION

Leaf anatomical traits which accommodate the facultative engagement of crassulacean acid metabolism in tropical trees of the genus Clusia

(2014) V. A. Barrera Zambrano et al.   JOURNAL OF EXPERIMENTAL BOTANY

P-Loop-Dependent NLR SNC1 Can Oligomerize and Activate Immunity in the Nucleus

(2014) Fang Xu et al.   Molecular Plant

Araport: the Arabidopsis Information Portal

(2014) Vivek Krishnakumar et al.   NUCLEIC ACIDS RESEARCH

The BioGRID interaction database: 2015 update

(2014) Andrew Chatr-aryamontri et al.   NUCLEIC ACIDS RESEARCH

The Leucine-Rich Repeat Receptor-Like Kinase BRASSINOSTEROID INSENSITIVE1-ASSOCIATED KINASE1 and the Cytochrome P450 PHYTOALEXIN DEFICIENT3 Contribute to Innate Immunity to Aphids in Arabidopsis

(2014) D. C. Prince et al.   PLANT PHYSIOLOGY

Combining growth-promoting genes leads to positive epistasis in Arabidopsis thaliana

(2014) Hannes Vanhaeren et al.   eLife

voom: precision weights unlock linear model analysis tools for RNA-seq read counts

(2014) Charity W Law et al.   GENOME BIOLOGY

Auxin metabolism and homeostasis during plant development

(2013) K. Ljung   DEVELOPMENT

ArabidopsisFerritin 1 (AtFer1) Gene Regulation by the Phosphate Starvation Response 1 (AtPHR1) Transcription Factor Reveals a Direct Molecular Link between Iron and Phosphate Homeostasis

(2013) Marc Bournier et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The grape berry-specific basic helix–loop–helix transcription factor VvCEB1 affects cell size

(2013) Philippe Nicolas et al.   JOURNAL OF EXPERIMENTAL BOTANY

Small auxin upregulated RNA (SAUR) gene family in maize: Identification, evolution, and its phylogenetic comparison withArabidopsis, rice, and sorghum

(2013) Yuzhu Chen et al.   Journal of Integrative Plant Biology

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Identification and Characterization of Transcription Factors Regulating Arabidopsis HAK5

(2013) Jong-Pil Hong et al.   PLANT AND CELL PHYSIOLOGY

Tissue-Specific Expression of SMALL AUXIN UP RNA41 Differentially Regulates Cell Expansion and Root Meristem Patterning in Arabidopsis

(2013) Yingying Kong et al.   PLANT AND CELL PHYSIOLOGY

Does Ploidy Level Directly Control Cell Size? Counterevidence from Arabidopsis Genetics

(2013) Hirokazu Tsukaya   PLoS One

Multiple bHLH Proteins form Heterodimers to Mediate CRY2-Dependent Regulation of Flowering-Time in Arabidopsis

(2013) Yawen Liu et al.   PLoS Genetics

The Biochemical Mechanism of Auxin Biosynthesis by anArabidopsisYUCCA Flavin-containing Monooxygenase

(2012) Xinhua Dai et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A combinatorial TIR1/AFB–Aux/IAA co-receptor system for differential sensing of auxin

(2012) Luz Irina A Calderón Villalobos et al.   Nature Chemical Biology

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Soluble Carbohydrates Regulate Auxin Biosynthesis via PIF Proteins in Arabidopsis

(2012) I. Sairanen et al.   PLANT CELL

Ion Exchangers NHX1 and NHX2 Mediate Active Potassium Uptake into Vacuoles to Regulate Cell Turgor and Stomatal Function in Arabidopsis

(2012) V. Barragan et al.   PLANT CELL

The endoplasmic reticulum localized PIN8 is a pollen-specific auxin carrier involved in intracellular auxin homeostasis

(2012) Cristina Dal Bosco et al.   PLANT JOURNAL

The SAUR19 subfamily of SMALL AUXIN UP RNA genes promote cell expansion

(2012) Angela K. Spartz et al.   PLANT JOURNAL

Protocol: High-throughput and quantitative assays of auxin and auxin precursors from minute tissue samples

(2012) Xing Liu et al.   Plant Methods

SAUR36, a SMALL AUXIN UP RNA Gene, Is Involved in the Promotion of Leaf Senescence in Arabidopsis

(2012) K. Hou et al.   PLANT PHYSIOLOGY

SAMBA, a plant-specific anaphase-promoting complex/cyclosome regulator is involved in early development and A-type cyclin stabilization

(2012) N. B. Eloy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ER-localized auxin transporter PIN8 regulates auxin homeostasis and male gametophyte development in Arabidopsis

(2012) Zhaojun Ding et al.   Nature Communications

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Principal component analysis based methods in bioinformatics studies

(2011) S. Ma et al.   BRIEFINGS IN BIOINFORMATICS

Brassinosteroid perception in the epidermis controls root meristem size

(2011) Y. Hacham et al.   DEVELOPMENT

Production of transgenic Nicotiana sylvestris plants expressing melatonin synthetase genes and their effect on UV-B-induced DNA damage

(2011) LaiJun Zhang et al.   IN VITRO CELLULAR & DEVELOPMENTAL BIOLOGY-PLANT

Arabidopsis ORGAN SIZE RELATED1 regulates organ growth and final organ size in orchestration with ARGOS and ARL

(2011) Guanping Feng et al.   NEW PHYTOLOGIST

AUXIN RESPONSE FACTOR8 Regulates Arabidopsis Petal Growth by Interacting with the bHLH Transcription Factor BIGPETALp

(2011) E. Varaud et al.   PLANT CELL

LOV KELCH PROTEIN2 and ZEITLUPE repress Arabidopsis photoperiodic flowering under non-inductive conditions, dependent on FLAVIN-BINDING KELCH REPEAT F-BOX1

(2011) Tomoyuki Takase et al.   PLANT JOURNAL

Model for the regulation of Arabidopsis thaliana leaf margin development

(2011) G. D. Bilsborough et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

AGRIS: the Arabidopsis Gene Regulatory Information Server, an update

(2010) A. Yilmaz et al.   NUCLEIC ACIDS RESEARCH

Molybdenum as an essential element for improving total yield in seawater-grown Salicornia europaea L.

(2010) Yvonne Ventura et al.   SCIENTIA HORTICULTURAE

Auxin at the Shoot Apical Meristem

(2010) T. Vernoux et al.   Cold Spring Harbor Perspectives in Biology

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Expression of a rice OsARGOS gene in Arabidopsis promotes cell division and expansion and increases organ size

(2009) Bao Wang et al.   Journal of Genetics and Genomics

Origin and Diversification of Basic-Helix-Loop-Helix Proteins in Plants

(2009) N. Pires et al.   MOLECULAR BIOLOGY AND EVOLUTION

BT2, a BTB Protein, Mediates Multiple Responses to Nutrients, Stresses, and Hormones in Arabidopsis

(2009) K. K. Mandadi et al.   PLANT PHYSIOLOGY

Rapid Synthesis of Auxin via a New Tryptophan-Dependent Pathway Is Required for Shade Avoidance in Plants

(2008) Yi Tao et al.   CELL

Making bigger plants: key regulators of final organ size

(2008) Beth A Krizek   CURRENT OPINION IN PLANT BIOLOGY

Comprehensive Transcriptome Analysis of Auxin Responses in Arabidopsis

(2008) Ivan A. Paponov et al.   Molecular Plant

Altered circadian rhythms regulate growth vigour in hybrids and allopolyploids

(2008) Zhongfu Ni et al.   NATURE

BTB and TAZ domain scaffold proteins perform a crucial function in Arabidopsis development

(2008) Hélène S. Robert et al.   PLANT JOURNAL

Photoexcited CRY2 Interacts with CIB1 to Regulate Transcription and Floral Initiation in Arabidopsis

(2008) H. Liu et al.   SCIENCE