GeneXX: an online tool for the exploration of transcript changes in skeletal muscle associated with exercise

Extracellular Vesicles Provide a Means for Tissue Crosstalk during Exercise

(2018) Martin Whitham et al.   Cell Metabolism

Why Batch Effects Matter in Omics Data, and How to Avoid Them

(2017) Wilson Wen Bin Goh et al.   TRENDS IN BIOTECHNOLOGY

Transcriptome sequencing study implicates immune-related genes differentially expressed in schizophrenia: new data and a meta-analysis

(2017) A R Sanders et al.   Translational Psychiatry

Global mRNA sequencing of human skeletal muscle: Search for novel exercise-regulated myokines

(2017) S. Pourteymour et al.   Molecular Metabolism

Novel evidence for complement system activation in chick myopia and hyperopia models: a meta-analysis of transcriptome datasets

(2017) Nina Riddell et al.   Scientific Reports

Exercise capacity and mortality – a follow-up study of 3033 subjects referred to clinical exercise testing

(2016) Raija Korpelainen et al.   ANNALS OF MEDICINE

The ever-expanding myokinome: discovery challenges and therapeutic implications

(2016) Martin Whitham et al.   NATURE REVIEWS DRUG DISCOVERY

DisGeNET: a comprehensive platform integrating information on human disease-associated genes and variants

(2016) Janet Piñero et al.   NUCLEIC ACIDS RESEARCH

Transcriptome meta-analysis reveals a dysregulation in extra cellular matrix and cell junction associated gene signatures during Dengue virus infection

(2016) Sumbul Afroz et al.   Scientific Reports

Extracellular matrix remodeling and its contribution to protective adaptation following lengthening contractions in human muscle

(2015) Robert D. Hyldahl et al.   FASEB JOURNAL

Deep Proteomics of Mouse Skeletal Muscle Enables Quantitation of Protein Isoforms, Metabolic Pathways, and Transcription Factors

(2015) Atul S. Deshmukh et al.   MOLECULAR & CELLULAR PROTEOMICS

Orchestrating high-throughput genomic analysis with Bioconductor

(2015) Wolfgang Huber et al.   NATURE METHODS

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Gene and MicroRNA Expression Responses to Exercise; Relationship with Insulin Sensitivity

(2015) Carrie S. McLean et al.   PLoS One

Prevalence of and interventions for sarcopenia in ageing adults: a systematic review. Report of the International Sarcopenia Initiative (EWGSOP and IWGS)

(2014) A. J. Cruz-Jentoft et al.   AGE AND AGEING

Meteorin-like Is a Hormone that Regulates Immune-Adipose Interactions to Increase Beige Fat Thermogenesis

(2014) Rajesh R. Rao et al.   CELL

An integrative analysis reveals coordinated reprogramming of the epigenome and the transcriptome in human skeletal muscle after training

(2014) Maléne E Lindholm et al.   Epigenetics

Physical Activity Interventions for People With Mental Illness

(2014) Simon Rosenbaum et al.   JOURNAL OF CLINICAL PSYCHIATRY

Global Meta-Analysis of Transcriptomics Studies

(2014) José Caldas et al.   PLoS One

Fatty acid-inducible ANGPTL4 governs lipid metabolic response to exercise

(2014) M. Catoire et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Simplified data access on human skeletal muscle transcriptome responses to differentiated exercise

(2014) Kristian Vissing et al.   Scientific Data

Exercise Metabolism and the Molecular Regulation of Skeletal Muscle Adaptation

(2013) Brendan Egan et al.   Cell Metabolism

Transcriptome analysis of neutrophils after endurance exercise reveals novel signaling mechanisms in the immune response to physiological stress

(2013) Oliver Neubauer et al.   JOURNAL OF APPLIED PHYSIOLOGY

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Lifestyle Modification for Obesity

(2012) Thomas A. Wadden et al.   CIRCULATION

Transcriptome signature of resistance exercise adaptations: mixed muscle and fiber type specific profiles in young and old adults

(2012) Ulrika Raue et al.   JOURNAL OF APPLIED PHYSIOLOGY

Syndecan–syntenin–ALIX regulates the biogenesis of exosomes

(2012) Maria Francesca Baietti et al.   NATURE CELL BIOLOGY

Comprehensive literature review and statistical considerations for microarray meta-analysis

(2012) George C. Tseng et al.   NUCLEIC ACIDS RESEARCH

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

(2012) Guangchuang Yu et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Pronounced Effects of Acute Endurance Exercise on Gene Expression in Resting and Exercising Human Skeletal Muscle

(2012) Milène Catoire et al.   PLoS One

survcomp: an R/Bioconductor package for performance assessment and comparison of survival models

(2011) Markus S. Schröder et al.   BIOINFORMATICS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

ggplot2: Elegant Graphics for Data Analysis

(2011) Cedric Ginestet   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES A-STATISTICS IN SOCIETY

A Systems Biology Approach Identifies Molecular Networks Defining Skeletal Muscle Abnormalities in Chronic Obstructive Pulmonary Disease

(2011) Nil Turan et al.   PLoS Computational Biology

Skeletal muscle gene expression in response to resistance exercise: sex specific regulation

(2010) Dongmei Liu et al.   BMC GENOMICS

PC4/Tis7/IFRD1Stimulates Skeletal Muscle Regeneration and Is Involved in Myoblast Differentiation as a Regulator of MyoD and NF-κB

(2010) Laura Micheli et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

ToppCluster: a multiple gene list feature analyzer for comparative enrichment clustering and network-based dissection of biological systems

(2010) V. Kaimal et al.   NUCLEIC ACIDS RESEARCH

FGF21 is an Akt-regulated myokine

(2008) Yasuhiro Izumiya et al.   FEBS LETTERS