Persistent homology analysis of ion aggregations and hydrogen-bonding networks
Published 2018 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Persistent homology analysis of ion aggregations and hydrogen-bonding networks
Authors
Keywords
-
Journal
PHYSICAL CHEMISTRY CHEMICAL PHYSICS
Volume 20, Issue 19, Pages 13448-13460
Publisher
Royal Society of Chemistry (RSC)
Online
2018-04-27
DOI
10.1039/c8cp01552j
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Quantitative Toxicity Prediction Using Topology Based Multitask Deep Neural Networks
- (2018) Kedi Wu et al. Journal of Chemical Information and Modeling
- Representability of algebraic topology for biomolecules in machine learning based scoring and virtual screening
- (2018) Zixuan Cang et al. PLoS Computational Biology
- Integration of element specific persistent homology and machine learning for protein-ligand binding affinity prediction
- (2017) Zixuan Cang et al. International Journal for Numerical Methods in Biomedical Engineering
- Rigidity Strengthening: A Mechanism for Protein–Ligand Binding
- (2017) Duc D. Nguyen et al. Journal of Chemical Information and Modeling
- Pore configuration landscape of granular crystallization
- (2017) M. Saadatfar et al. Nature Communications
- TopologyNet: Topology based deep convolutional and multi-task neural networks for biomolecular property predictions
- (2017) Zixuan Cang et al. PLoS Computational Biology
- Hydrogen Bond Network of Water around Protein Investigated with Terahertz and Infrared Spectroscopy
- (2016) Keiichiro Shiraga et al. BIOPHYSICAL JOURNAL
- Ion aggregation in high salt solutions. VI. Spectral graph analysis of chaotropic ion aggregates
- (2016) Jun-Ho Choi et al. JOURNAL OF CHEMICAL PHYSICS
- Object-oriented persistent homology
- (2016) Bao Wang et al. JOURNAL OF COMPUTATIONAL PHYSICS
- Hierarchical structures of amorphous solids characterized by persistent homology
- (2016) Yasuaki Hiraoka et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Electrolytes induce long-range orientational order and free energy changes in the H-bond network of bulk water
- (2016) Y. Chen et al. Science Advances
- Topological Characterization of Complex Systems: Using Persistent Entropy
- (2015) Emanuela Merelli et al. Entropy
- Persistent topology for cryo-EM data analysis
- (2015) Kelin Xia et al. International Journal for Numerical Methods in Biomedical Engineering
- Multiresolution Topological Simplification
- (2015) Kelin Xia et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Multidimensional persistence in biomolecular data
- (2015) Kelin Xia et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- An entropy-based persistence barcode
- (2015) Harish Chintakunta et al. PATTERN RECOGNITION
- Persistent homology analysis of protein structure, flexibility, and folding
- (2014) Kelin Xia et al. International Journal for Numerical Methods in Biomedical Engineering
- Ion aggregation in high salt solutions: Ion network versus ion cluster
- (2014) Seongheun Kim et al. JOURNAL OF CHEMICAL PHYSICS
- Ion aggregation in high salt solutions. II. Spectral graph analysis of water hydrogen-bonding network and ion aggregate structures
- (2014) Jun-Ho Choi et al. JOURNAL OF CHEMICAL PHYSICS
- Persistent homology for the quantitative prediction of fullerene stability
- (2014) Kelin Xia et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- Morse Theory for Filtrations and Efficient Computation of Persistent Homology
- (2013) Konstantin Mischaikow et al. DISCRETE & COMPUTATIONAL GEOMETRY
- Mechanisms of Acceleration and Retardation of Water Dynamics by Ions
- (2013) Guillaume Stirnemann et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Hydrogen bond network topology in liquid water and methanol: a graph theory approach
- (2013) Imre Bakó et al. PHYSICAL CHEMISTRY CHEMICAL PHYSICS
- Microscopic Evidence for Liquid-Liquid Separation in Supersaturated CaCO3 Solutions
- (2013) A. F. Wallace et al. SCIENCE
- Hofmeister Phenomena: An Update on Ion Specificity in Biology
- (2012) Pierandrea Lo Nostro et al. CHEMICAL REVIEWS
- Reeb Graphs: Approximation and Persistence
- (2012) Tamal K. Dey et al. DISCRETE & COMPUTATIONAL GEOMETRY
- A fast algorithm for constructing topological structure in large data
- (2012) Xu Liu et al. Homology Homotopy and Applications
- Persistent Brain Network Homology From the Perspective of Dendrogram
- (2012) Hyekyoung Lee et al. IEEE TRANSACTIONS ON MEDICAL IMAGING
- Multivariate Data Analysis Using Persistence-Based Filtering and Topological Signatures
- (2012) B. Rieck et al. IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS
- Persistent Betti numbers for a noise tolerant shape-based approach to image retrieval
- (2012) Patrizio Frosini et al. PATTERN RECOGNITION LETTERS
- Water Jump Reorientation: From Theoretical Prediction to Experimental Observation
- (2011) Damien Laage et al. ACCOUNTS OF CHEMICAL RESEARCH
- A Mayer–Vietoris Formula for Persistent Homology with an Application to Shape Recognition in the Presence of Occlusions
- (2011) Barbara Di Fabio et al. FOUNDATIONS OF COMPUTATIONAL MATHEMATICS
- Topology-Based Kernels With Application to Inference Problems in Alzheimer's Disease
- (2011) Deepti Pachauri et al. IEEE TRANSACTIONS ON MEDICAL IMAGING
- Branching and Circular Features in High Dimensional Data
- (2011) Bei Wang et al. IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS
- On the hydrogen bond networks in the water–methanol mixtures: topology, percolation and small-world
- (2011) Juliana Angeiras Batista da Silva et al. PHYSICAL CHEMISTRY CHEMICAL PHYSICS
- Ion clustering in aqueous solutions probed with vibrational energy transfer
- (2011) H. Bian et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- A Topological View of Unsupervised Learning from Noisy Data
- (2011) P. Niyogi et al. SIAM JOURNAL ON COMPUTING
- Lipschitz Functions Have L p -Stable Persistence
- (2010) David Cohen-Steiner et al. FOUNDATIONS OF COMPUTATIONAL MATHEMATICS
- Computing Robustness and Persistence for Images
- (2010) P Bendich et al. IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS
- Cooperativity in Ion Hydration
- (2010) K. J. Tielrooij et al. SCIENCE
- Topology and data
- (2009) Gunnar Carlsson BULLETIN OF THE AMERICAN MATHEMATICAL SOCIETY
- Effect of Ions on the Structure of Water: Structure Making and Breaking
- (2009) Yizhak Marcus CHEMICAL REVIEWS
- Topological methods for exploring low-density states in biomolecular folding pathways
- (2009) Yuan Yao et al. JOURNAL OF CHEMICAL PHYSICS
- Persistent homology of complex networks
- (2009) Danijela Horak et al. JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT
- Computing geometry-aware handle and tunnel loops in 3D models
- (2008) Tamal K. Dey et al. ACM TRANSACTIONS ON GRAPHICS
- Localized homology
- (2008) Afra Zomorodian et al. COMPUTATIONAL GEOMETRY-THEORY AND APPLICATIONS
- Topological analysis of population activity in visual cortex
- (2008) G. Singh et al. JOURNAL OF VISION
- Water–methanol mixtures: topology of hydrogen bonded network
- (2008) Imre Bakó et al. PHYSICAL CHEMISTRY CHEMICAL PHYSICS
Create your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started