Early-life antibiotics attenuate regulatory T cell generation and increase the severity of murine house dust mite-induced asthma

The importance of appropriate initial bacterial colonization of the intestine in newborn, child, and adult health

(2017) W Allan Walker   PEDIATRIC RESEARCH

Antibiotic use and its consequences for the normal microbiome

(2016) Martin J. Blaser   SCIENCE

The Intestinal Microbiota Contributes to the Ability of Helminths to Modulate Allergic Inflammation

(2015) Mario M. Zaiss et al.   IMMUNITY

Long-Term Exposure to House Dust Mite Leads to the Suppression of Allergic Airway Disease Despite Persistent Lung Inflammation

(2015) Sonali J. Bracken et al.   INTERNATIONAL ARCHIVES OF ALLERGY AND IMMUNOLOGY

Perinatal antibiotic-induced shifts in gut microbiota have differential effects on inflammatory lung diseases

(2015) Shannon L. Russell et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Early infancy microbial and metabolic alterations affect risk of childhood asthma

(2015) Marie-Claire Arrieta et al.   Science Translational Medicine

Metabolic and metagenomic outcomes from early-life pulsed antibiotic treatment

(2015) Yael R. Nobel et al.   Nature Communications

Milk- and solid-feeding practices and daycare attendance are associated with differences in bacterial diversity, predominant communities, and metabolic and immune function of the infant gut microbiome

(2015) Amanda L. Thompson et al.   Frontiers in Cellular and Infection Microbiology

Trends in the Prevalence of Asthma

(2014) Malcolm R. Sears   CHEST

Analysis, Optimization and Verification of Illumina-Generated 16S rRNA Gene Amplicon Surveys

(2014) Michael C. Nelson et al.   PLoS One

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Low gut microbiota diversity in early infancy precedes asthma at school age

(2013) T. R. Abrahamsson et al.   CLINICAL AND EXPERIMENTAL ALLERGY

Next-generation DNA sequencing reveals that low fungal diversity in house dust is associated with childhood asthma development

(2013) K. C. Dannemiller et al.   INDOOR AIR

Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota

(2013) Koji Atarashi et al.   NATURE

Probiotic Administration in Early Life, Atopy, and Asthma: A Meta-analysis of Clinical Trials

(2013) N. Elazab et al.   PEDIATRICS

Early life antibiotic-driven changes in microbiota enhance susceptibility to allergic asthma

(2012) Shannon L Russell et al.   EMBO REPORTS

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Regulatory B cells from hilar lymph nodes of tolerant mice in a murine model of allergic airway disease are CD5+, express TGF-β and co-localize with CD4+Foxp3+ T cells

(2012) P Natarajan et al.   Mucosal Immunology

Commensal bacteria–derived signals regulate basophil hematopoiesis and allergic inflammation

(2012) David A Hill et al.   NATURE MEDICINE

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Asthma endotypes: A new approach to classification of disease entities within the asthma syndrome

(2011) Jan Lötvall et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Succession of microbial consortia in the developing infant gut microbiome

(2010) J. E. Koenig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regulatory T cells and asthma

(2009) D. S. Robinson   CLINICAL AND EXPERIMENTAL ALLERGY

Asthma

(2009) Christopher H. Fanta   NEW ENGLAND JOURNAL OF MEDICINE