Venom allergen-like protein 28 in Clonorchis sinensis: four epitopes on its surface and the potential role of Cys124 for its conformational stability

Mutation-Structure-Function Relationship Based Integrated Strategy Reveals the Potential Impact of Deleterious Missense Mutations in Autophagy Related Proteins on Hepatocellular Carcinoma (HCC): A Comprehensive Informatics Approach

(2017) Faryal Awan et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Monomerization alters the dynamics of the lid region inCampylobacter jejuniCstII: an MD simulation study

(2016) Pradeep Kumar Prabhakar et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

ResQ: An Approach to Unified Estimation of B -Factor and Residue-Specific Error in Protein Structure Prediction

(2016) Jianyi Yang et al.   JOURNAL OF MOLECULAR BIOLOGY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

The barber's pole worm CAP protein superfamily — A basis for fundamental discovery and biotechnology advances

(2015) Namitha Mohandas et al.   BIOTECHNOLOGY ADVANCES

Accelerated Evolution of Schistosome Genes Coding for Proteins Located at the Host–Parasite Interface

(2015) Gisele S. Philippsen et al.   Genome Biology and Evolution

Identification of anti-allergic effect of Clonorchis sinensis-derived protein venom allergen-like proteins (CsVAL)

(2014) Young-Il Jeong et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Excreted/secreted Schistosoma mansoni venom allergen-like 9 (SmVAL9) modulates host extracellular matrix remodelling gene expression

(2014) Timothy P. Yoshino et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Homology modeling: an important tool for the drug discovery

(2014) Tanos Celmar Costa França   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

iMODS: internal coordinates normal mode analysis server

(2014) José Ramón López-Blanco et al.   NUCLEIC ACIDS RESEARCH

Enhancing UCSF Chimera through web services

(2014) Conrad C. Huang et al.   NUCLEIC ACIDS RESEARCH

SWISS-MODEL: modelling protein tertiary and quaternary structure using evolutionary information

(2014) Marco Biasini et al.   NUCLEIC ACIDS RESEARCH

UniProt: a hub for protein information

(2014)   NUCLEIC ACIDS RESEARCH

HemI: A Toolkit for Illustrating Heatmaps

(2014) Wankun Deng et al.   PLoS One

Schistosoma mansonivenom allergen-like protein 4 (SmVAL4) is a novel lipid-binding SCP/TAPS protein that lacks the prototypical CAP motifs

(2014) Alan Kelleher et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Protein–ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment

(2013) Jianyi Yang et al.   BIOINFORMATICS

Disulfide by Design 2.0: a web-based tool for disulfide engineering in proteins

(2013) Douglas B Craig et al.   BMC BIOINFORMATICS

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

The ModFOLD4 server for the quality assessment of 3D protein models

(2013) Liam J. McGuffin et al.   NUCLEIC ACIDS RESEARCH

Platyhelminth Venom Allergen-Like (VAL) proteins: revealing structural diversity, class-specific features and biological associations across the phylum

(2012) IAIN W. CHALMERS et al.   PARASITOLOGY

Molecular characterization of an α-N-acetylgalactosaminidase from Clonorchis sinensis

(2012) Myoung-Ro Lee et al.   PARASITOLOGY RESEARCH

Insights into SCP/TAPS Proteins of Liver Flukes Based on Large-Scale Bioinformatic Analyses of Sequence Datasets

(2012) Cinzia Cantacessi et al.   PLoS One

Web servers and services for electrostatics calculations with APBS and PDB2PQR

(2011) Samir Unni et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Proteomic analysis of secretory products from the model gastrointestinal nematode Heligmosomoides polygyrus reveals dominance of Venom Allergen-Like (VAL) proteins

(2011) James P. Hewitson et al.   Journal of Proteomics

The identification of antigenic proteins: 14-3-3 protein and propionyl-CoA carboxylase in Clonorchis sinensis

(2011) Myoung-Ro Lee et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

A 2020 vision for vaccines against HIV, tuberculosis and malaria

(2011) Rino Rappuoli et al.   NATURE

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Clonorchis sinensis and clonorchiasis, an update

(2011) Sung-Tae Hong et al.   PARASITOLOGY INTERNATIONAL

Developmental Transcriptomic Features of the Carcinogenic Liver Fluke, Clonorchis sinensis

(2011) Won Gi Yoo et al.   PLoS Neglected Tropical Diseases

Gene Expression Patterns in Larval Schistosoma mansoni Associated with Infection of the Mammalian Host

(2011) Sophia J. Parker-Manuel et al.   PLoS Neglected Tropical Diseases

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

A review of human carcinogens—Part B: biological agents

(2009) Véronique Bouvard et al.   LANCET ONCOLOGY

Identification of a serodiagnostic antigen, legumain, by immunoproteomic analysis of excretory-secretory products ofClonorchis sinensisadult worms

(2009) Jung-Won Ju et al.   PROTEOMICS

Developmentally regulated expression, alternative splicing and distinct sub-groupings in members of the Schistosoma mansoni venom allergen-like (SmVAL) gene family

(2008) Iain W Chalmers et al.   BMC GENOMICS

The CAP Superfamily: Cysteine-Rich Secretory Proteins, Antigen 5, and Pathogenesis-Related 1 Proteins—Roles in Reproduction, Cancer, and Immune Defense

(2008) Gerard M. Gibbs et al.   ENDOCRINE REVIEWS