Translational profiling of B cells infected with the Epstein-Barr virus reveals 5′ leader ribosome recruitment through upstream open reading frames

A Temporal Proteomic Map of Epstein-Barr Virus Lytic Replication in B Cells

(2017) Ina Ersing et al.   Cell Reports

Global transcript structure resolution of high gene density genomes through multi-platform data integration

(2016) Tina O'Grady et al.   NUCLEIC ACIDS RESEARCH

High-Resolution Analysis of Coronavirus Gene Expression by RNA Sequencing and Ribosome Profiling

(2016) Nerea Irigoyen et al.   PLoS Pathogens

The Epstein-Barr Virus Immunoevasins BCRF1 and BPLF1 Are Expressed by a Mechanism Independent of the Canonical Late Pre-initiation Complex

(2016) Jessica McKenzie et al.   PLoS Pathogens

Integrative analysis of RNA, translation, and protein levels reveals distinct regulatory variation across humans

(2015) Can Cenik et al.   GENOME RESEARCH

Latent Expression of the Epstein-Barr Virus (EBV)-Encoded Major Histocompatibility Complex Class I TAP Inhibitor,BNLF2a, in EBV-Positive Gastric Carcinomas

(2015) Michael J. Strong et al.   JOURNAL OF VIROLOGY

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Efficient replication of Epstein–Barr virus in stratified epithelium in vitro

(2014) Rachel M. Temple et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

KSHV 2.0: A Comprehensive Annotation of the Kaposi's Sarcoma-Associated Herpesvirus Genome Using Next-Generation Sequencing Reveals Novel Genomic and Functional Features

(2014) Carolina Arias et al.   PLoS Pathogens

Extensive translation of small Open Reading Frames revealed by Poly-Ribo-Seq

(2014) Julie L Aspden et al.   eLife

Global Bidirectional Transcription of the Epstein-Barr Virus Genome during Reactivation

(2013) T. O'Grady et al.   JOURNAL OF VIROLOGY

Extensive transcriptional heterogeneity revealed by isoform profiling

(2013) Vicent Pelechano et al.   NATURE

The RNA Degradation Pathway Regulates the Function of GAS5 a Non-Coding RNA in Mammalian Cells

(2013) Hidenori Tani et al.   PLoS One

Spontaneous Lytic Replication and Epitheliotropism Define an Epstein-Barr Virus Strain Found in Carcinomas

(2013) Ming-Han Tsai et al.   Cell Reports

Gene Expression Regulation by Upstream Open Reading Frames and Human Disease

(2013) Cristina Barbosa et al.   PLoS Genetics

An Upstream Open Reading Frame Modulates Ebola Virus Polymerase Translation and Virus Replication

(2013) Reed S. Shabman et al.   PLoS Pathogens

A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

(2012) M.-A. Dillies et al.   BRIEFINGS IN BIOINFORMATICS

Whole-Genome Sequencing of the Akata and Mutu Epstein-Barr Virus Strains

(2012) Z. Lin et al.   JOURNAL OF VIROLOGY

The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments

(2012) Nicholas T Ingolia et al.   Nature Protocols

Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution

(2012) S. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Decoding Human Cytomegalovirus

(2012) N. Stern-Ginossar et al.   SCIENCE

Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes

(2011) Nicholas T. Ingolia et al.   CELL

Autoregulation of the nonsense-mediated mRNA decay pathway in human cells

(2011) H. Yepiskoposyan et al.   RNA

Animal virus schemes for translation dominance

(2011) Lucas C Reineke et al.   Current Opinion in Virology

Initiation of Epstein-Barr Virus Lytic Replication Requires Transcription and the Formation of a Stable RNA-DNA Hybrid Molecule at OriLyt

(2010) A. J. Rennekamp et al.   JOURNAL OF VIROLOGY

Regulation of Translation Initiation in Eukaryotes: Mechanisms and Biological Targets

(2009) Nahum Sonenberg et al.   CELL

Epstein-Barr virus BART gene expression

(2009) M. Al-Mozaini et al.   JOURNAL OF GENERAL VIROLOGY

Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans

(2009) S. E. Calvo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling

(2009) N. T. Ingolia et al.   SCIENCE

The search for infectious causes of human cancers: Where and why

(2009) Harald zur Hausen   VIROLOGY

Expression and Processing of a Small Nucleolar RNA from the Epstein-Barr Virus Genome

(2009) Roland Hutzinger et al.   PLoS Pathogens

uORFs, reinitiation and alternative translation start sites in human mRNAs

(2008) Alex V. Kochetov et al.   FEBS LETTERS

The Epstein-Barr Virus LF2 Protein Inhibits Viral Replication

(2008) M. A. Calderwood et al.   JOURNAL OF VIROLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS