Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation
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Title
Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation
Authors
Keywords
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Journal
NATURE NEUROSCIENCE
Volume 21, Issue 3, Pages 432-439
Publisher
Springer Nature
Online
2018-02-12
DOI
10.1038/s41593-018-0079-3
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Note: Only part of the references are listed.- Neuronal activity modifies the chromatin accessibility landscape in the adult brain
- (2017) Yijing Su et al. NATURE NEUROSCIENCE
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- (2016) B. B. Lake et al. SCIENCE
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- (2016) O. Matcovitch-Natan et al. SCIENCE
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- (2015) Matthew T Maurano et al. NATURE GENETICS
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- (2015) Alisa Mo et al. NEURON
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- (2015) Alex S. Nord et al. NEURON
- Lhx2 regulates the timing of β-catenin-dependent cortical neurogenesis
- (2015) Lea Chia-Ling Hsu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq
- (2015) A. Zeisel et al. SCIENCE
- Multiplex single-cell profiling of chromatin accessibility by combinatorial cellular indexing
- (2015) D. A. Cusanovich et al. SCIENCE
- Switching on cilia: transcriptional networks regulating ciliogenesis
- (2014) S. P. Choksi et al. DEVELOPMENT
- A comparative encyclopedia of DNA elements in the mouse genome
- (2014) Feng Yue et al. NATURE
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- (2014) Marco Onorati et al. NATURE NEUROSCIENCE
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- (2014) Hagen B Huttner et al. NATURE NEUROSCIENCE
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- (2014) J. Vierstra et al. SCIENCE
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- (2014) A. Rodriguez et al. SCIENCE
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- (2014) Ralf Gilsbach et al. Nature Communications
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- (2013) Axel Visel et al. CELL
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- (2013) Arttu Jolma et al. CELL
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- (2013) R. Lister et al. SCIENCE
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- (2012) Robert E. Thurman et al. NATURE
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- (2012) B. Martynoga et al. Cold Spring Harbor Perspectives in Biology
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- (2011) D. S. Castro et al. GENES & DEVELOPMENT
- Transcription factor Lhx2 is necessary and sufficient to suppress astrogliogenesis and promote neurogenesis in the developing hippocampus
- (2011) L. Subramanian et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
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- (2010) Serena Ghisletti et al. IMMUNITY
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- (2010) Xinyong Tian et al. MOLECULAR AND CELLULAR NEUROSCIENCE
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- (2009) M. D. Robinson et al. BIOINFORMATICS
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- (2009) Jason E. Long et al. CEREBRAL CORTEX
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- (2008) A. C. Barbosa et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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