A three-dimensional single-cell-resolution whole-brain atlas using CUBIC-X expansion microscopy and tissue clearing

Iterative expansion microscopy

(2017) Jae-Byum Chang et al.   NATURE METHODS

High-Speed and Scalable Whole-Brain Imaging in Rodents and Primates

(2017) Kaoru Seiriki et al.   NEURON

Chemical Principles in Tissue Clearing and Staining Protocols for Whole-Body Cell Profiling

(2016) Kazuki Tainaka et al.   Annual Review of Cell and Developmental Biology

The search for true numbers of neurons and glial cells in the human brain: A review of 150 years of cell counting

(2016) Christopher S. von Bartheld et al.   JOURNAL OF COMPARATIVE NEUROLOGY

Protein-retention expansion microscopy of cells and tissues labeled using standard fluorescent proteins and antibodies

(2016) Paul W Tillberg et al.   NATURE BIOTECHNOLOGY

Multiplexed and scalable super-resolution imaging of three-dimensional protein localization in size-adjustable tissues

(2016) Taeyun Ku et al.   NATURE BIOTECHNOLOGY

Shrinkage-mediated imaging of entire organs and organisms using uDISCO

(2016) Chenchen Pan et al.   NATURE METHODS

Involvement of Ca 2+ -Dependent Hyperpolarization in Sleep Duration in Mammals

(2016) Fumiya Tatsuki et al.   NEURON

Super-Resolution Mapping of Neuronal Circuitry With an Index-Optimized Clearing Agent

(2016) Meng-Tsen Ke et al.   Cell Reports

Whole-body tissue stabilization and selective extractions via tissue-hydrogel hybrids for high-resolution intact circuit mapping and phenotyping

(2015) Jennifer B Treweek et al.   Nature Protocols

A diffusion tensor MRI atlas of the postmortem rhesus macaque brain

(2015) Evan Calabrese et al.   NEUROIMAGE

Expansion microscopy

(2015) F. Chen et al.   SCIENCE

A versatile clearing agent for multi-modal brain imaging

(2015) Irene Costantini et al.   Scientific Reports

Mapping Social Behavior-Induced Brain Activation at Cellular Resolution in the Mouse

(2015) Yongsoo Kim et al.   Cell Reports

Dopamine neurons projecting to the posterior striatum form an anatomically distinct subclass

(2015) William Menegas et al.   eLife

A Rapid Optical Clearing Protocol Using 2,2′-Thiodiethanol for Microscopic Observation of Fixed Mouse Brain

(2015) Yuka Aoyagi et al.   PLoS One

Whole-brain mapping of behaviourally induced neural activation in mice

(2014) Dulcie A. Vousden et al.   Brain Structure & Function

Whole-Brain Imaging with Single-Cell Resolution Using Chemical Cocktails and Computational Analysis

(2014) Etsuo A. Susaki et al.   CELL

Single-Cell Phenotyping within Transparent Intact Tissue through Whole-Body Clearing

(2014) Bin Yang et al.   CELL

A mesoscale connectome of the mouse brain

(2014) Seung Wook Oh et al.   NATURE

Waxholm Space atlas of the Sprague Dawley rat brain

(2014) Eszter A. Papp et al.   NEUROIMAGE

The Stimulus Selectivity and Connectivity of Layer Six Principal Cells Reveals Cortical Microcircuits Underlying Visual Processing

(2014) Mateo Vélez-Fort et al.   NEURON

In Vivo Visualization of Subtle, Transient, and Local Activity of Astrocytes Using an Ultrasensitive Ca2+ Indicator

(2014) Kazunori Kanemaru et al.   Cell Reports

TeraStitcher - A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images

(2013) Alessandro Bria et al.   BMC BIOINFORMATICS

Structural and molecular interrogation of intact biological systems

(2013) Kwanghun Chung et al.   NATURE

BigBrain: An Ultrahigh-Resolution 3D Human Brain Model

(2013) K. Amunts et al.   SCIENCE

An anatomically comprehensive atlas of the adult human brain transcriptome

(2012) Michael J. Hawrylycz et al.   NATURE

Three-dimensional imaging of solvent-cleared organs using 3DISCO

(2012) Ali Ertürk et al.   Nature Protocols

Transcriptome Tomography for Brain Analysis in the Web-Accessible Anatomical Space

(2012) Yuko Okamura-Oho et al.   PLoS One

The INIA19 Template and NeuroMaps Atlas for Primate Brain Image Parcellation and Spatial Normalization

(2012) Torsten Rohlfing et al.   Frontiers in Neuroinformatics

Updated Neuronal Scaling Rules for the Brains of Glires (Rodents/Lagomorphs)

(2011) Suzana Herculano-Houzel et al.   BRAIN BEHAVIOR AND EVOLUTION

Gene induction in mature oligodendrocytes with a PLP-tTA mouse line

(2011) Naoko Inamura et al.   GENESIS

Establishment of conditional reporter mouse lines at ROSA26 locus for live cell imaging

(2011) Takaya Abe et al.   GENESIS

Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge

(2011) K. Murphy et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Scale: a chemical approach for fluorescence imaging and reconstruction of transparent mouse brain

(2011) Hiroshi Hama et al.   NATURE NEUROSCIENCE

Quantitative Expression Profile of Distinct Functional Regions in the Adult Mouse Brain

(2011) Takeya Kasukawa et al.   PLoS One

Flexible Accelerated STOP Tetracycline Operator-Knockin (FAST): A Versatile and Efficient New Gene Modulating System

(2010) Kenji F. Tanaka et al.   BIOLOGICAL PSYCHIATRY

Waxholm Space: An image-based reference for coordinating mouse brain research

(2010) G. Allan Johnson et al.   NEUROIMAGE

A reproducible evaluation of ANTs similarity metric performance in brain image registration

(2010) Brian B. Avants et al.   NEUROIMAGE

Are the Dorsal and Ventral Hippocampus Functionally Distinct Structures?

(2010) Michael S. Fanselow et al.   NEURON

Guidance Molecules in Axon Pruning and Cell Death

(2010) P. Vanderhaeghen et al.   Cold Spring Harbor Perspectives in Biology

CATMAID: collaborative annotation toolkit for massive amounts of image data

(2009) S. Saalfeld et al.   BIOINFORMATICS

Reconstruction of Zebrafish Early Embryonic Development by Scanned Light Sheet Microscopy

(2008) P. J. Keller et al.   SCIENCE